Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_O03
(648 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80UU9|PGRC2_MOUSE Membrane associated progesterone rece... 138 1e-32
sp|Q5XIU9|PGRC2_RAT Membrane associated progesterone recept... 138 1e-32
sp|O15173|PGRC2_HUMAN Membrane associated progesterone rece... 138 1e-32
sp|O00264|PGRC1_HUMAN Membrane associated progesterone rece... 123 5e-28
sp|O55022|PGRC1_MOUSE Membrane associated progesterone rece... 121 2e-27
sp|Q95250|PGRC1_PIG Membrane associated progesterone recept... 121 2e-27
sp|P70580|PGRC1_RAT Membrane associated progesterone recept... 119 5e-27
sp|O13995|YL81_SCHPO Hypothetical protein C25B8.01 in chrom... 86 8e-17
sp|Q9SK39|SBP3_ARATH Putative steroid binding protein 3 (At... 77 3e-14
sp|Q12091|DAP1_YEAST Damage response protein 1 74 2e-13
>sp|Q80UU9|PGRC2_MOUSE Membrane associated progesterone receptor component 2
Length = 214
Score = 138 bits (348), Expect = 1e-32
Identities = 65/117 (55%), Positives = 84/117 (71%)
Frame = +1
Query: 91 LPKLKMRDFTVSALAQFDGINSPYRLIAVNGNIFDVTKVGQNLYGKGAPYSNFAGRDASR 270
LP++K RDF++ L Q+DG +P L+AVNG +FDVTK G YG PY FAGRDASR
Sbjct: 86 LPRMKKRDFSLEQLRQYDGARTPRILLAVNGKVFDVTK-GSKFYGPAGPYGIFAGRDASR 144
Query: 271 ALSTFSNNPQVFKDEYDDLTDLNSDEMGRLKEWELQFKEKYQLVGRLLRPGEPAHQY 441
L+TF + +DEYDDL+DLN+ +M ++EWE+QFKEKY VGRLL+PGE +Y
Sbjct: 145 GLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGEEPSEY 201
>sp|Q5XIU9|PGRC2_RAT Membrane associated progesterone receptor component 2
Length = 217
Score = 138 bits (348), Expect = 1e-32
Identities = 65/117 (55%), Positives = 84/117 (71%)
Frame = +1
Query: 91 LPKLKMRDFTVSALAQFDGINSPYRLIAVNGNIFDVTKVGQNLYGKGAPYSNFAGRDASR 270
LP++K RDF++ L Q+DG +P L+AVNG +FDVTK G YG PY FAGRDASR
Sbjct: 89 LPRMKKRDFSLEQLRQYDGARTPRILLAVNGKVFDVTK-GSKFYGPAGPYGIFAGRDASR 147
Query: 271 ALSTFSNNPQVFKDEYDDLTDLNSDEMGRLKEWELQFKEKYQLVGRLLRPGEPAHQY 441
L+TF + +DEYDDL+DLN+ +M ++EWE+QFKEKY VGRLL+PGE +Y
Sbjct: 148 GLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGEEPSEY 204
>sp|O15173|PGRC2_HUMAN Membrane associated progesterone receptor component 2 (Progesterone
membrane binding protein) (Steroid receptor protein DG6)
Length = 223
Score = 138 bits (347), Expect = 1e-32
Identities = 65/117 (55%), Positives = 84/117 (71%)
Frame = +1
Query: 91 LPKLKMRDFTVSALAQFDGINSPYRLIAVNGNIFDVTKVGQNLYGKGAPYSNFAGRDASR 270
LP++K RDF++ L Q+DG +P L+AVNG +FDVTK G YG PY FAGRDASR
Sbjct: 95 LPRMKKRDFSLEQLRQYDGSRNPRILLAVNGKVFDVTK-GSKFYGPAGPYGIFAGRDASR 153
Query: 271 ALSTFSNNPQVFKDEYDDLTDLNSDEMGRLKEWELQFKEKYQLVGRLLRPGEPAHQY 441
L+TF + +DEYDDL+DLN+ +M ++EWE+QFKEKY VGRLL+PGE +Y
Sbjct: 154 GLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGEEPSEY 210
>sp|O00264|PGRC1_HUMAN Membrane associated progesterone receptor component 1 (mPR)
Length = 195
Score = 123 bits (308), Expect = 5e-28
Identities = 61/117 (52%), Positives = 78/117 (66%)
Frame = +1
Query: 91 LPKLKMRDFTVSALAQFDGINSPYRLIAVNGNIFDVTKVGQNLYGKGAPYSNFAGRDASR 270
LP+LK RDFT + L +FDG+ P L+A+NG +FDVTK G+ YG PY FAGRDASR
Sbjct: 65 LPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTK-GRKFYGPEGPYGVFAGRDASR 123
Query: 271 ALSTFSNNPQVFKDEYDDLTDLNSDEMGRLKEWELQFKEKYQLVGRLLRPGEPAHQY 441
L+TF + + KDEYDDL+DL + + L +WE QF KY VG+LL+ GE Y
Sbjct: 124 GLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVY 180
>sp|O55022|PGRC1_MOUSE Membrane associated progesterone receptor component 1
Length = 195
Score = 121 bits (303), Expect = 2e-27
Identities = 60/117 (51%), Positives = 77/117 (65%)
Frame = +1
Query: 91 LPKLKMRDFTVSALAQFDGINSPYRLIAVNGNIFDVTKVGQNLYGKGAPYSNFAGRDASR 270
LP+LK RDFT + L +FDG+ P L+A+NG +FDVTK G+ YG PY FAGRDASR
Sbjct: 65 LPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTK-GRKFYGPEGPYGVFAGRDASR 123
Query: 271 ALSTFSNNPQVFKDEYDDLTDLNSDEMGRLKEWELQFKEKYQLVGRLLRPGEPAHQY 441
L+TF + + KDEYDDL+DL + L +W+ QF KY VG+LL+ GE Y
Sbjct: 124 GLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKLLKEGEEPTVY 180
>sp|Q95250|PGRC1_PIG Membrane associated progesterone receptor component 1
Length = 194
Score = 121 bits (303), Expect = 2e-27
Identities = 60/117 (51%), Positives = 77/117 (65%)
Frame = +1
Query: 91 LPKLKMRDFTVSALAQFDGINSPYRLIAVNGNIFDVTKVGQNLYGKGAPYSNFAGRDASR 270
LP+LK RDFT + L +FDG+ P L+A+NG +FDVTK G+ YG PY FAGRDASR
Sbjct: 64 LPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTK-GRKFYGPEGPYGVFAGRDASR 122
Query: 271 ALSTFSNNPQVFKDEYDDLTDLNSDEMGRLKEWELQFKEKYQLVGRLLRPGEPAHQY 441
L+TF + + KDEYDDL+DL + L +W+ QF KY VG+LL+ GE Y
Sbjct: 123 GLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKLLKEGEEPTVY 179
>sp|P70580|PGRC1_RAT Membrane associated progesterone receptor component 1 (Acidic 25
kDa protein) (25-DX)
Length = 195
Score = 119 bits (299), Expect = 5e-27
Identities = 59/117 (50%), Positives = 77/117 (65%)
Frame = +1
Query: 91 LPKLKMRDFTVSALAQFDGINSPYRLIAVNGNIFDVTKVGQNLYGKGAPYSNFAGRDASR 270
LP+LK RDFT + L ++DG+ P L+A+NG +FDVTK G+ YG PY FAGRDASR
Sbjct: 65 LPRLKPRDFTPAELRRYDGVQDPRILMAINGKVFDVTK-GRKFYGPEGPYGVFAGRDASR 123
Query: 271 ALSTFSNNPQVFKDEYDDLTDLNSDEMGRLKEWELQFKEKYQLVGRLLRPGEPAHQY 441
L+TF + + KDEYDDL+DL + L +W+ QF KY VG+LL+ GE Y
Sbjct: 124 GLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKLLKEGEEPTVY 180
>sp|O13995|YL81_SCHPO Hypothetical protein C25B8.01 in chromosome I
Length = 166
Score = 85.9 bits (211), Expect = 8e-17
Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Frame = +1
Query: 64 KSVIYNDEVLPKL-KMRDFTVSALAQFDGINSPYRLIAVNGNIFDVTKVGQNLYGKGAPY 240
KS I ++E PK + RD+T + L +++G + +A+ G +++VT +G YG PY
Sbjct: 27 KSFIASEE--PKQPEWRDYTPAELKEYNGSKNSLVFLAIKGTVYNVT-MGSKFYGPQGPY 83
Query: 241 SNFAGRDASRALSTFSNNPQVFKD----EYDDLTDLNSDEMGRLKEWELQFKEKYQLVGR 408
S FAG DASR L+ S + + D E DD +DLN +E L +W+ F +KYQ VGR
Sbjct: 84 SAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGR 143
Query: 409 LLRPGE 426
L+ P E
Sbjct: 144 LISpre 149
>sp|Q9SK39|SBP3_ARATH Putative steroid binding protein 3 (AtMP3)
Length = 100
Score = 77.4 bits (189), Expect = 3e-14
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +1
Query: 112 DFTVSALAQFDGINSPYRL-IAVNGNIFDVTKVGQNLYGKGAPYSNFAGRDASRALSTFS 288
+FT L+Q++G + + +A+ G +FDVT G++ YG G YS FAG+DASRAL S
Sbjct: 2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVT-TGKSFYGSGGDYSMFAGKDASRALGKMS 60
Query: 289 NNPQVFKDEYDDLTDLNSDEMGRLKEWELQFKEKYQLVGRLL 414
N + D L L E+ L +WE +F+ KY +VGR++
Sbjct: 61 KNEE---DVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 99
>sp|Q12091|DAP1_YEAST Damage response protein 1
Length = 152
Score = 74.3 bits (181), Expect = 2e-13
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Frame = +1
Query: 112 DFTVSALAQFDGINSPYRLIAVNGNIFDVTKVGQNLYGKGAPYSNFAGRDASRALSTFSN 291
+F L++F+G + IA+ G ++D T+ G+ YG PY+NFAG DASR L+ S
Sbjct: 43 NFFPRTLSKFNGHDDEKIFIAIRGKVYDCTR-GRQFYGPSGPYTNFAGHDASRGLALNSF 101
Query: 292 NPQVFKD---EYDDLTDLNSDEMGRLKEWELQFKEKYQLVGRLL-RPG 423
+ V KD D L DL +++ L EW+ F+ KY +G L+ PG
Sbjct: 102 DLDVIKDWDQPIDPLDDLTKEQIDALDEWQEHFENKYPCIGTLIPEPG 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,246,855
Number of Sequences: 369166
Number of extensions: 1000547
Number of successful extensions: 2425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2411
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)