Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_N09
(638 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6B2C0|MTAL2_YEAST Mating-type protein ALPHA2 (MATalpha2... 31 3.1
sp|P20646|PPAP_RAT Prostatic acid phosphatase precursor 30 4.0
sp|P49916|DNL3_HUMAN DNA ligase III (Polydeoxyribonucleotid... 29 8.9
sp|P47108|YJ11_YEAST Hypothetical 135.1 kDa protein in GEF1... 29 8.9
>sp|Q6B2C0|MTAL2_YEAST Mating-type protein ALPHA2 (MATalpha2 protein) (Alpha-2 repressor)
Length = 210
Score = 30.8 bits (68), Expect = 3.1
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 172 IEIRNSLGSLSEYNSNSVTWIEYSKL---TSQVFSPISLLIKQFLSIIPSFANVSL 14
+E+R+ LG LS N N E KL TSQ+ + I++L+K+ SI +N L
Sbjct: 49 VELRDILGFLSRANKNRKISDEEKKLLQTTSQLTTTITVLLKEMRSIENDRSNYQL 104
>sp|P20646|PPAP_RAT Prostatic acid phosphatase precursor
Length = 381
Score = 30.4 bits (67), Expect = 4.0
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 108 SIHVTELELYSDNDPSELRISITSQTKKTKFPVAAKSCANGCKIPIKKDAE 260
S H+ +ELY DN + + + ++T+ +P+ C + C P++K AE
Sbjct: 311 SCHI--MELYQDNGGTFVEMYYRNETQNEPYPLTLPGCTHSC--PLEKFAE 357
>sp|P49916|DNL3_HUMAN DNA ligase III (Polydeoxyribonucleotide synthase [ATP])
Length = 922
Score = 29.3 bits (64), Expect = 8.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 207 AAKSCANGCKIPIKKDAEKVQIEKTG 284
A K C NG IK D E+VQ+ K G
Sbjct: 408 AMKKCPNGMFSEIKYDGERVQVHKNG 433
>sp|P47108|YJ11_YEAST Hypothetical 135.1 kDa protein in GEF1-NUP85 intergenic region
Length = 1174
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/53 (28%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = -2
Query: 193 VFFV*LVIEIRNSLGSLSEYNSNSVTWIEYSKLTSQVFSPISL--LIKQFLSI 41
+F + L+I+ N+ G+L ++ ++ TWI +++L + PIS+ L+K+ ++
Sbjct: 50 IFVLDLLIDRLNN-GNLDDFKTSEHTWIIFTRLLDAINDPISIKKLLKKLKTV 101
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,423,425
Number of Sequences: 369166
Number of extensions: 946949
Number of successful extensions: 2538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2538
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)