Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_N07
(872 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 298 1e-80
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 296 4e-80
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 296 4e-80
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 295 1e-79
sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HI... 280 5e-75
sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3) 278 1e-74
sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2) 276 4e-74
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 270 5e-72
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 267 3e-71
sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) 256 4e-68
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 298 bits (763), Expect = 1e-80
Identities = 144/275 (52%), Positives = 198/275 (72%)
Frame = +2
Query: 2 VICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERD 181
VIC+KC G GGK+G+V+KC C+G G+++HI+Q+GPGMVQQ+QT C CKG+ E IN +D
Sbjct: 133 VICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKD 192
Query: 182 RCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVF 361
RC+ C G KV+REKK++EVH++KGM DGQ+I F+GEGDQEP LEPGD+ IVL++K H+VF
Sbjct: 193 RCESCSGAKVIREKKIIEVHVEKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVF 252
Query: 362 TRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKY 541
R+ DLI MK+ L ++LCGFK+TI TLDNRILV+ +K GEVIK+ + R + +EGMP Y
Sbjct: 253 QRRGHDLIMKMKIQLSEALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIY 312
Query: 542 KSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDP 721
K+P E+G LIIQF V+FPE ++L +KL +L ++LPP Q D+M + E L + P
Sbjct: 313 KAPLEKGILIIQFLVIFPEKHWLSLEKLPQLEALLPPRQKVRITDDMDQVE---LKEFCP 369
Query: 722 SMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQC 826
+ N + + Y+ D++G G VQC
Sbjct: 370 NEQN------WRQHREAYEEDEDGPQAG----VQC 394
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 296 bits (759), Expect = 4e-80
Identities = 144/271 (53%), Positives = 192/271 (70%)
Frame = +2
Query: 2 VICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERD 181
VICDKC GRGGK+GAV+ C +CRG G+++ I Q+GPGMVQQ+Q+ C C+G E I+ +D
Sbjct: 132 VICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKD 191
Query: 182 RCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVF 361
RCK C G+K+VREKK+LEVHIDKGM DGQ+I F+GEGDQEPGLEPGDI IVL++K H VF
Sbjct: 192 RCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVF 251
Query: 362 TRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKY 541
TR+ DL M + LV++LCGF++ I+TLDNR +V+ + PG+++K+ + + + NEGMP Y
Sbjct: 252 TRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIY 311
Query: 542 KSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDP 721
+ P+E+GRLII+F V FPEN FL DKL+ L +LP + D M + E L +DP
Sbjct: 312 RRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVE---LVDFDP 368
Query: 722 SMANSKSQDRYHERHHVYDSDDEGGMPGGAQ 814
+ + R H Y+ DDE GG Q
Sbjct: 369 N-----QERRRHYNGEAYE-DDEHHPRGGVQ 393
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 296 bits (759), Expect = 4e-80
Identities = 144/271 (53%), Positives = 192/271 (70%)
Frame = +2
Query: 2 VICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERD 181
VICDKC GRGGK+GAV+ C +CRG G+++ I Q+GPGMVQQ+Q+ C C+G E I+ +D
Sbjct: 132 VICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKD 191
Query: 182 RCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVF 361
RCK C G+K+VREKK+LEVHIDKGM DGQ+I F+GEGDQEPGLEPGDI IVL++K H VF
Sbjct: 192 RCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVF 251
Query: 362 TRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKY 541
TR+ DL M + LV++LCGF++ I+TLDNR +V+ + PG+++K+ + + + NEGMP Y
Sbjct: 252 TRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIY 311
Query: 542 KSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDP 721
+ P+E+GRLII+F V FPEN FL DKL+ L +LP + D M + E L +DP
Sbjct: 312 RRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVE---LVDFDP 368
Query: 722 SMANSKSQDRYHERHHVYDSDDEGGMPGGAQ 814
+ + R H Y+ DDE GG Q
Sbjct: 369 N-----QERRRHYNGEAYE-DDEHHPRGGVQ 393
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 295 bits (755), Expect = 1e-79
Identities = 143/275 (52%), Positives = 196/275 (71%)
Frame = +2
Query: 2 VICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERD 181
VIC+KC G GGK+G+V+KC C+G G++VHI+Q+GPGMVQQ+QT C CKG+ E IN +D
Sbjct: 133 VICEKCEGIGGKKGSVEKCPLCKGRGMQVHIQQIGPGMVQQIQTVCIECKGQGERINPKD 192
Query: 182 RCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVF 361
RC+ C G KV REKK++EVH++KGM DGQ+I F+GEGDQEP L+PGD+ IVL++K H+VF
Sbjct: 193 RCENCSGAKVTREKKIIEVHVEKGMKDGQKILFHGEGDQEPELDPGDVIIVLDQKDHSVF 252
Query: 362 TRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKY 541
R+ DLI MK+ L ++LCGFK+TI TLD+R+LV+ +K GEVIK+ + + I NEGMP Y
Sbjct: 253 QRRGQDLIMKMKIQLSEALCGFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIY 312
Query: 542 KSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDP 721
K+P E+G +IIQF VVFPE +L +KL +L ++LPP Q D+M + E L ++P
Sbjct: 313 KAPLEKGVMIIQFLVVFPEKQWLSQEKLPQLEALLPPRQKVRITDDMDQVE---LKEFNP 369
Query: 722 SMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQC 826
++ + + Y+ DDE G VQC
Sbjct: 370 ------NEQSWRQHREAYEEDDEEPRAG----VQC 394
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HIRA interacting protein 4)
(Cell cycle progression restoration gene 3 protein)
(Dnj3)
Length = 412
Score = 280 bits (715), Expect = 5e-75
Identities = 141/276 (51%), Positives = 184/276 (66%)
Frame = +2
Query: 2 VICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERD 181
V+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ+ C C GE EVINE+D
Sbjct: 141 VLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKD 200
Query: 182 RCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVF 361
RCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+EPGDI ++L+EK H VF
Sbjct: 201 RCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVF 260
Query: 362 TRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKY 541
R DL K+ LV++LCGF+ T LD R +VV+ PG+VI+ R + EGMP+Y
Sbjct: 261 QRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQY 320
Query: 542 KSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDP 721
++PFE+G L I+FDV FPENN++ DKL++L +LP ++ + E EE L +D
Sbjct: 321 RNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNI--IGETEEVELQEFDS 378
Query: 722 SMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 829
+ + Q R DS DE VQCA
Sbjct: 379 TRGSGGGQ----RREAYNDSSDEESSSHHGPGVQCA 410
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 278 bits (712), Expect = 1e-74
Identities = 141/276 (51%), Positives = 184/276 (66%)
Frame = +2
Query: 2 VICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERD 181
V+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ+ C C GE EVINE+D
Sbjct: 141 VLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKD 200
Query: 182 RCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVF 361
RCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+EPGDI ++L+EK H VF
Sbjct: 201 RCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVF 260
Query: 362 TRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKY 541
R DL K+ LV++LCGF+ T LD R +VV+ PG+VI+ R + EGMP+Y
Sbjct: 261 QRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQY 320
Query: 542 KSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDP 721
++PFE+G L I+FDV FPENN++ DKL++L +LP ++ + E EE L +D
Sbjct: 321 RNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNV--IGETEEVELQEFDS 378
Query: 722 SMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 829
+ + Q R DS DE VQCA
Sbjct: 379 TRGSGGGQ----RREAYNDSSDEESSSHHGPGVQCA 410
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 276 bits (707), Expect = 4e-74
Identities = 140/276 (50%), Positives = 183/276 (66%)
Frame = +2
Query: 2 VICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERD 181
V+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ+ C C GE EVINE+D
Sbjct: 141 VLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKD 200
Query: 182 RCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVF 361
RCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+EPGDI + ++EK H VF
Sbjct: 201 RCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLFVQEKEHEVF 260
Query: 362 TRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKY 541
R DL K+ LV++LCGF+ T LD R +VV+ PG+VI+ R + EGMP+Y
Sbjct: 261 QRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQY 320
Query: 542 KSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDP 721
++PFE+G L I+FDV FPENN++ DKL++L +LP ++ + E EE L +D
Sbjct: 321 RNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNV--IGETEEVELQEFDS 378
Query: 722 SMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 829
+ + Q R DS DE VQCA
Sbjct: 379 TRGSGGGQ----RREAYNDSSDEESSSHHGPGVQCA 410
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 270 bits (689), Expect = 5e-72
Identities = 136/277 (49%), Positives = 184/277 (66%), Gaps = 1/277 (0%)
Frame = +2
Query: 2 VICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERD 181
VIC KCNG+G K GA +C SC+G G++V IRQLGPGM+QQMQ C CKG E+IN++D
Sbjct: 125 VICSKCNGKGSKSGASMRCASCQGSGMKVSIRQLGPGMIQQMQHPCNDCKGTGEMINDKD 184
Query: 182 RCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVF 361
RC C+G+KVV+EKKVLEVH++KGM +GQ+I F GE D+ P GDI VL++K H F
Sbjct: 185 RCPLCKGEKVVQEKKVLEVHVEKGMQNGQRITFPGEADEAPDTVTGDIVFVLQQKEHPKF 244
Query: 362 TRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKY 541
RK DL Y L L ++LCGF+ +T LD R L++++ PGEV+K +++AI++EGMP Y
Sbjct: 245 QRKGDDLFYKHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDQFKAINDEGMPMY 304
Query: 542 KSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLD-NMKEAEECVLHPYD 718
+ PF +G+L IQF V FP++ L D+ + S+LP S S D + E EE +H D
Sbjct: 305 QRPFMRGKLYIQFLVDFPDS--LTPDQCKVIESVLPRSASSQLTDMEIDECEETTMH--D 360
Query: 719 PSMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 829
++ + ++ YD DDEG GG QRVQCA
Sbjct: 361 VNIEEEMRRKQHQHAQEAYDEDDEG--HGGGQRVQCA 395
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 267 bits (682), Expect = 3e-71
Identities = 135/278 (48%), Positives = 188/278 (67%), Gaps = 2/278 (0%)
Frame = +2
Query: 2 VICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERD 181
V+C KC G+G K GA C SC+G G++V IRQLGPGM+QQMQ C CKG E+I+++D
Sbjct: 146 VLCTKCKGKGSKSGASMNCASCQGSGMKVSIRQLGPGMIQQMQHPCNECKGTGEMISDKD 205
Query: 182 RCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVF 361
RC +C+G+KVV++KKVLEVH++KGM +GQ+I F GE D+ P GDI VL++K H F
Sbjct: 206 RCPQCKGEKVVQQKKVLEVHVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKF 265
Query: 362 TRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKY 541
RK DL Y L L ++LCGF+ +T LDNR L++++ PGEVIK +++ I++EGMP Y
Sbjct: 266 KRKGDDLFYEHSLSLTEALCGFQFVLTHLDNRQLLIKSNPGEVIKPDQFKGINDEGMPMY 325
Query: 542 KSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMK--EAEECVLHPY 715
+ PF +G+L I F V FP++ L D+ L S+L PS+ +S L +M+ E EE +H
Sbjct: 326 QRPFMRGKLYIHFSVDFPDS--LTPDQCKALESVL-PSRNASRLTDMEIDECEETTMH-- 380
Query: 716 DPSMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 829
D ++ + ++ + YD DDEG GGAQRVQCA
Sbjct: 381 DVNIEEEMRRKQHQQAQEAYDEDDEG--HGGAQRVQCA 416
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)
Length = 420
Score = 256 bits (655), Expect = 4e-68
Identities = 130/276 (47%), Positives = 175/276 (63%), Gaps = 1/276 (0%)
Frame = +2
Query: 5 ICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDR 184
+C KCNG+G K GA KC C+G G++V IRQLGPGM+QQMQ C CKG E IN+RDR
Sbjct: 147 LCSKCNGKGSKSGASLKCGGCQGSGMKVSIRQLGPGMIQQMQHACNECKGTGETINDRDR 206
Query: 185 CKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFT 364
C +C+G KV+ EKKVLEV+++KGM Q+I F G+ D+ P GDI VL++K H F
Sbjct: 207 CPQCKGDKVIPEKKVLEVNVEKGMQHSQKITFEGQADEAPDTVTGDIVFVLQQKEHPKFK 266
Query: 365 RKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYK 544
RK DL L L ++LCGF+ +T LD R L++++ PGEV+K Y+AI +EGMP Y+
Sbjct: 267 RKGEDLFVEHTLSLTEALCGFQFVLTHLDGRSLLIKSNPGEVVKPDSYKAISDEGMPIYQ 326
Query: 545 SPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILP-PSQFSSSLDNMKEAEECVLHPYDP 721
PF +G+L I F V FP++ L D+ L ++LP PS S + E EE LH D
Sbjct: 327 RPFMKGKLYIHFTVEFPDS--LSPDQTKALEAVLPKPSTAQLSDMEIDECEETTLH--DV 382
Query: 722 SMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 829
++ + + +R D D++ PGGAQRVQCA
Sbjct: 383 NIEDEMRRKAQAQREAYDDDDEDDDHPGGAQRVQCA 418
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,206,730
Number of Sequences: 369166
Number of extensions: 1856845
Number of successful extensions: 6413
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5926
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)