Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_N03
(334 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 >gi|54039461... 129 2e-30
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 129 2e-30
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 129 2e-30
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 128 4e-30
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 126 2e-29
sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 124 9e-29
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 123 2e-28
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 122 3e-28
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 >gi|52000789... 121 6e-28
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 119 2e-27
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
sp|P62298|RS23_CHILA 40S ribosomal protein S23
sp|P62266|RS23_HUMAN 40S ribosomal protein S23
sp|P62268|RS23_RAT 40S ribosomal protein S23
Length = 143
Score = 129 bits (325), Expect = 2e-30
Identities = 62/68 (91%), Positives = 65/68 (95%)
Frame = +3
Query: 126 KTEKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 305
K KKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 306 GKKERPRA 329
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 89.4 bits (220), Expect = 2e-18
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 8 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 139
K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
Length = 143
Score = 129 bits (325), Expect = 2e-30
Identities = 62/68 (91%), Positives = 65/68 (95%)
Frame = +3
Query: 126 KTEKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 305
K KKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 306 GKKERPRA 329
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 89.4 bits (220), Expect = 2e-18
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 8 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 139
K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
Length = 143
Score = 129 bits (325), Expect = 2e-30
Identities = 62/68 (91%), Positives = 65/68 (95%)
Frame = +3
Query: 126 KTEKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 305
K KKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 306 GKKERPRA 329
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 89.4 bits (220), Expect = 2e-18
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 8 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 139
K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
Length = 143
Score = 128 bits (322), Expect = 4e-30
Identities = 61/68 (89%), Positives = 65/68 (95%)
Frame = +3
Query: 126 KTEKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 305
K KKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKVAN SL+AL+K
Sbjct: 76 KNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFK 135
Query: 306 GKKERPRA 329
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 92.4 bits (228), Expect = 3e-19
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 2 RFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 139
R+KSNPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 35 RWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
Length = 143
Score = 126 bits (316), Expect = 2e-29
Identities = 60/68 (88%), Positives = 64/68 (94%)
Frame = +3
Query: 126 KTEKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 305
K KKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFKIVKVAN SL+AL+K
Sbjct: 76 KNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFK 135
Query: 306 GKKERPRA 329
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 88.6 bits (218), Expect = 4e-18
Identities = 43/46 (93%), Positives = 45/46 (97%)
Frame = +2
Query: 2 RFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 139
R+K+NPFG ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 35 RWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23
Length = 143
Score = 124 bits (310), Expect = 9e-29
Identities = 60/68 (88%), Positives = 64/68 (94%)
Frame = +3
Query: 126 KTEKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 305
K KKITAFVPNDGCLN+IEENDEVLV+GFGRSGHAVGDIPGVRFKIVKVANVSL AL+
Sbjct: 76 KNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFT 135
Query: 306 GKKERPRA 329
GKKERPR+
Sbjct: 136 GKKERPRS 143
Score = 89.0 bits (219), Expect = 3e-18
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 8 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 139
K+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 37 KANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
Length = 143
Score = 123 bits (308), Expect = 2e-28
Identities = 59/68 (86%), Positives = 63/68 (92%)
Frame = +3
Query: 126 KTEKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 305
K KKITAFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 306 GKKERPRA 329
KKERPR+
Sbjct: 136 EKKERPRS 143
Score = 91.7 bits (226), Expect = 5e-19
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 2 RFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 139
R+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 35 RWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
Length = 143
Score = 122 bits (306), Expect = 3e-28
Identities = 59/68 (86%), Positives = 63/68 (92%)
Frame = +3
Query: 126 KTEKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 305
K KKITAFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVA+VSLLALYK
Sbjct: 76 KNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYK 135
Query: 306 GKKERPRA 329
KKERPR+
Sbjct: 136 QKKERPRS 143
Score = 92.8 bits (229), Expect = 2e-19
Identities = 45/46 (97%), Positives = 46/46 (100%)
Frame = +2
Query: 2 RFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 139
R+KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 35 RWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
Length = 143
Score = 121 bits (303), Expect = 6e-28
Identities = 58/68 (85%), Positives = 62/68 (91%)
Frame = +3
Query: 126 KTEKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 305
K KK+TAFVP DGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 306 GKKERPRA 329
KKERPR+
Sbjct: 136 EKKERPRS 143
Score = 91.7 bits (226), Expect = 5e-19
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 2 RFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 139
R+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 35 RWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
Length = 143
Score = 119 bits (298), Expect = 2e-27
Identities = 58/68 (85%), Positives = 62/68 (91%)
Frame = +3
Query: 126 KTEKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 305
K KKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 306 GKKERPRA 329
KKERPR+
Sbjct: 136 EKKERPRS 143
Score = 91.7 bits (226), Expect = 5e-19
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 2 RFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 139
R+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 35 RWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,263,998
Number of Sequences: 369166
Number of extensions: 632222
Number of successful extensions: 2490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2467
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)