Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_M07
(219 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08928|LAM0_DROME Lamin Dm0 57 1e-08
sp|P11048|LAMA_XENLA Lamin A 49 5e-06
sp|P11516|LAMC_MOUSE Lamins C and C2 48 6e-06
sp|P48678|LAMA_MOUSE Lamin A 48 6e-06
sp|P13648|LAMA_CHICK Lamin A 48 8e-06
sp|P48679|LAMA_RAT Lamin A 48 8e-06
sp|P02545|LAMA_HUMAN Lamin A/C (70 kDa lamin) 47 2e-05
sp|P14732|LAM2_CHICK Lamin B2 43 2e-04
sp|P14733|LAM1_MOUSE Lamin B1 41 7e-04
sp|P70615|LAM1_RAT Lamin B1 41 7e-04
>sp|P08928|LAM0_DROME Lamin Dm0
Length = 622
Score = 57.4 bits (137), Expect = 1e-08
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Frame = +3
Query: 3 TYKFHHNLHVKAKTDCTVWSSDSNETHNPPTDLVMKGQRFFSGVNIRMSLVYSDNHEEAR 182
TYKFH ++ ++ TVWS+D+ +H PP+ LVMK Q++ S N R L+ S+ A
Sbjct: 514 TYKFHRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVAN 573
Query: 183 CS----VVNDHTRTS 215
+V+ HT +S
Sbjct: 574 LDRIKRIVSQHTSSS 588
>sp|P11048|LAMA_XENLA Lamin A
Length = 665
Score = 48.5 bits (114), Expect = 5e-06
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Frame = +3
Query: 6 YKFHHNLHVKAKTDCTVWSSDSNETHNPPTDLVMKGQRFF-SGVNIRMSLVYSDNHEEA- 179
YKF L +KA T+W+S + T++PP+DLV K Q + +G +IR +L+ S N E A
Sbjct: 478 YKFPPRLTLKAGQTVTIWASGAGATNSPPSDLVWKAQSSWGTGDSIRTALLTSSNEEVAM 537
Query: 180 ----RCSVVND 200
R V+ND
Sbjct: 538 RKLVRTVVIND 548
>sp|P11516|LAMC_MOUSE Lamins C and C2
Length = 574
Score = 48.1 bits (113), Expect = 6e-06
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 3 TYKFHHNLHVKAKTDCTVWSSDSNETHNPPTDLVMKGQRFFS-GVNIRMSLVYSDNHEEA 179
TY+F +KA T+W+S + TH+PPTDLV K Q + G ++R +L+ S E A
Sbjct: 480 TYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVA 539
Query: 180 RCSVVNDHT 206
+V T
Sbjct: 540 MRKLVRSLT 548
>sp|P48678|LAMA_MOUSE Lamin A
Length = 665
Score = 48.1 bits (113), Expect = 6e-06
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 3 TYKFHHNLHVKAKTDCTVWSSDSNETHNPPTDLVMKGQRFFS-GVNIRMSLVYSDNHEEA 179
TY+F +KA T+W+S + TH+PPTDLV K Q + G ++R +L+ S E A
Sbjct: 480 TYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVA 539
Query: 180 RCSVVNDHT 206
+V T
Sbjct: 540 MRKLVRSLT 548
>sp|P13648|LAMA_CHICK Lamin A
Length = 657
Score = 47.8 bits (112), Expect = 8e-06
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 3 TYKFHHNLHVKAKTDCTVWSSDSNETHNPPTDLVMKGQRFF-SGVNIRMSLVYSDNHEEA 179
TY+F +KA T+W+S + TH+PP+D+V K Q + SG ++R +L+ S+ E A
Sbjct: 481 TYRFPPKFTLKAGQAVTIWASGAGATHSPPSDVVWKAQSSWGSGDSLRTALINSNGEEVA 540
Query: 180 -----RCSVVND 200
R ++ND
Sbjct: 541 MRKLVRTVIIND 552
>sp|P48679|LAMA_RAT Lamin A
Length = 665
Score = 47.8 bits (112), Expect = 8e-06
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 3 TYKFHHNLHVKAKTDCTVWSSDSNETHNPPTDLVMKGQRFFS-GVNIRMSLVYSDNHEEA 179
TY+F +KA T+W+S + TH+PPTDLV K Q + G ++R +L+ + E A
Sbjct: 480 TYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGTSLRTALINATGEEVA 539
Query: 180 RCSVVNDHT 206
+V T
Sbjct: 540 MRKLVRSLT 548
>sp|P02545|LAMA_HUMAN Lamin A/C (70 kDa lamin)
Length = 664
Score = 46.6 bits (109), Expect = 2e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 3 TYKFHHNLHVKAKTDCTVWSSDSNETHNPPTDLVMKGQRFFS-GVNIRMSLVYSDNHEEA 179
TY+F +KA T+W++ + TH+PPTDLV K Q + G ++R +L+ S E A
Sbjct: 480 TYRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
Query: 180 RCSVVNDHT 206
+V T
Sbjct: 540 MRKLVRSVT 548
>sp|P14732|LAM2_CHICK Lamin B2
Length = 600
Score = 43.1 bits (100), Expect = 2e-04
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 6 YKFHHNLHVKAKTDCTVWSSDSNETHNPPTDLVMKGQ-RFFSGVNIRMSLVYSDNHEEA 179
YKF ++A T+W +D+ +H+PP+ LV K Q + +G NIR LV SD E A
Sbjct: 498 YKFTPKYVLRAGQTVTIWGADAGVSHSPPSVLVWKNQGSWGTGGNIRTYLVNSDGEEVA 556
>sp|P14733|LAM1_MOUSE Lamin B1
Length = 588
Score = 41.2 bits (95), Expect = 7e-04
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +3
Query: 3 TYKFHHNLHVKAKTDCTVWSSDSNETHNPPTDLVMKGQRFF-SGVNIRMSLVYSDNHEEA 179
+YK+ +KA TVW++++ T +PPTDL+ K Q + +G ++++ L S E A
Sbjct: 482 SYKYTSRYVLKAGQTVTVWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVA 541
Query: 180 RCSVV 194
+ S V
Sbjct: 542 QRSTV 546
>sp|P70615|LAM1_RAT Lamin B1
Length = 587
Score = 41.2 bits (95), Expect = 7e-04
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +3
Query: 3 TYKFHHNLHVKAKTDCTVWSSDSNETHNPPTDLVMKGQRFF-SGVNIRMSLVYSDNHEEA 179
+YK+ +KA TVW++++ T +PPTDL+ K Q + +G ++++ L S E A
Sbjct: 481 SYKYTSRYVLKAGQTVTVWAANAGVTASPPTDLIWKNQNSWGTGEDVKVVLKNSQGEEVA 540
Query: 180 RCSVV 194
+ S V
Sbjct: 541 QRSTV 545
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,529,815
Number of Sequences: 369166
Number of extensions: 400628
Number of successful extensions: 848
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 68,354,980
effective HSP length: 44
effective length of database: 60,226,640
effective search space used: 1686345920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)