Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_L19-2
(286 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q81ZU6|GLGB_NITEU 1,4-alpha-glucan branching enzyme (Gly... 29 2.9
sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 (HD9) (HD7B) (HD7) 29 3.8
sp|Q9Z8I4|LEPA_CHLPN GTP-binding protein lepA 29 3.8
sp|Q9QYH1|MPP4_RAT MAGUK p55 subfamily member 4 (Discs, lar... 29 3.8
sp|P50193|MTHB_HAEPH Modification methylase HphIB (Adenine-... 28 5.0
sp|Q5QV04|RL25_IDILO 50S ribosomal protein L25 (General str... 28 5.0
sp|P12956|KU70_HUMAN ATP-dependent DNA helicase II, 70 kDa ... 28 6.5
sp|P06766|DPOLB_RAT DNA polymerase beta 28 6.5
sp|Q6P7F1|MPP4_MOUSE MAGUK p55 subfamily member 4 (Discs la... 28 6.5
sp|Q9CYK2|QPCT_MOUSE Glutaminyl-peptide cyclotransferase pr... 28 6.5
>sp|Q81ZU6|GLGB_NITEU 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE)
(1,4-alpha-D-glucan:1,4-alpha-D-glucan
6-glucosyl-transferase)
Length = 734
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 54 FTIILSNGLLLALPGDSRYPSEFNVDSV 137
FT IL G + +PG S Y FN DS+
Sbjct: 663 FTPILRTGYRVGIPGSSAYQEVFNSDSI 690
>sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 (HD9) (HD7B) (HD7)
Length = 1011
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -1
Query: 205 SKKTVLRKYLSLLMSSTDKYFIVTESTLNSEGYRESPGNASNNPFDRIIVKKTLSFPP 32
S + RK +++ S + F VTES+++S P + +N P + +T PP
Sbjct: 239 SSPLLRRKDGNVVTSFKKRMFEVTESSVSSSSPGSGPSSPNNGPTGSVTENETSVLPP 296
>sp|Q9Z8I4|LEPA_CHLPN GTP-binding protein lepA
Length = 602
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 45 NVFFTIILSNGLLLALPGDSRYPSEFNVDSVTMKYLSVEDISKDKYL 185
+V + ++L NG +L + S YP ++ V ++ V I+ +YL
Sbjct: 375 SVIYKVVLKNGKVLDIDNPSGYPDPAIIEHVEEPWVHVNIITPQEYL 421
>sp|Q9QYH1|MPP4_RAT MAGUK p55 subfamily member 4 (Discs, large homolog 6) (rDLG6)
Length = 441
Score = 28.9 bits (63), Expect = 3.8
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = +3
Query: 15 VKRQKCGGNDNVFFTIILSNGLLLALPGDSRYPSEFNVDSVTMKYLSVEDISKDKYLRRT 194
++RQ G N + F + A+P +R P + +D Y+S E Y R
Sbjct: 248 LRRQLIGCNPSCFQS---------AVPHTTRSPKSYEMDGREYHYVSRETFESLMYGHRM 298
Query: 195 VFFDGEYVFHHNLNS*NCVFAV 260
+ F GEY H S N V AV
Sbjct: 299 LEF-GEYKGHLYGTSVNAVLAV 319
>sp|P50193|MTHB_HAEPH Modification methylase HphIB (Adenine-specific methyltransferase
HphIB) (M.HphIB) (M.HphI(A))
Length = 336
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 114 SEFNVDSVTMKYLSVEDISKDKYLRRTVFFDGEYVFH--HNLNS*N 245
S F + +K L E+ S KY RR + + + FH NLNS N
Sbjct: 147 SRFTISWEKVKQLRDEEYSYSKYGRRRAYHNQSFEFHFRENLNSYN 192
>sp|Q5QV04|RL25_IDILO 50S ribosomal protein L25 (General stress protein CTC)
Length = 221
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -2
Query: 120 ILKDIENHPVMPAITHL----IELL*KKHYHFPRIFV 22
ILKD++ HP P +THL +E K H + P F+
Sbjct: 77 ILKDMQRHPYKPKLTHLDFQRVEKGHKLHTNLPLHFL 113
>sp|P12956|KU70_HUMAN ATP-dependent DNA helicase II, 70 kDa subunit (Lupus Ku autoantigen
protein p70) (Ku70) (70 kDa subunit of Ku antigen)
(Thyroid-lupus autoantigen) (TLAA) (CTC box binding
factor 75 kDa subunit) (CTCBF) (CTC75)
Length = 609
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 9 EAVKRQKCGGNDNVFFTIILSNGLLLALPGDSRYPSEFNVDSVTMKYLSVEDISKDKYLR 188
EA K G D++ F + S + + D P + ++ + Y+S + IS D+ L
Sbjct: 25 EASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYIS-KIISSDRDLL 83
Query: 189 RTVFFDGE 212
VF+ E
Sbjct: 84 AVVFYGTE 91
>sp|P06766|DPOLB_RAT DNA polymerase beta
Length = 335
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 51 FFTIILSNGLLLALPGDSRYPSEFNVDSVTMKYLSVEDISKDKYLRRTVFFDGEYVFHHN 230
F T LS G + G + PSE + + + + + I KD+Y ++F G +F+ N
Sbjct: 223 FITDTLSKGETKFM-GVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKN 281
Query: 231 LNS 239
+ +
Sbjct: 282 MRA 284
>sp|Q6P7F1|MPP4_MOUSE MAGUK p55 subfamily member 4 (Discs large homolog 6) (MDLG6)
Length = 635
Score = 28.1 bits (61), Expect = 6.5
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = +3
Query: 15 VKRQKCGGNDNVFFTIILSNGLLLALPGDSRYPSEFNVDSVTMKYLSVEDISKDKYLRRT 194
++RQ G N + F + A+P +R+P + +D Y+S E Y +
Sbjct: 442 LRRQLIGCNPSCFQS---------AVPHTTRFPKSYEMDGREYHYVSRETFESLMYGHKM 492
Query: 195 VFFDGEYVFHHNLNS*NCVFAV 260
+ + GEY H S N V AV
Sbjct: 493 LEY-GEYKGHLYGTSVNAVHAV 513
>sp|Q9CYK2|QPCT_MOUSE Glutaminyl-peptide cyclotransferase precursor (QC) (Glutaminyl-tRNA
cyclotransferase) (Glutaminyl cyclase)
Length = 362
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 144 KYLSVEDISKDK--YLRRTVFFDGEYVFHH 227
K S++D+S K R +FFDGE FHH
Sbjct: 178 KLHSLKDVSGSKPDLSLRLIFFDGEEAFHH 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,683,483
Number of Sequences: 369166
Number of extensions: 555822
Number of successful extensions: 1366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)