Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_L19-1
(236 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20063|LDLR_RABIT Low-density lipoprotein receptor (LDL ... 31 0.78
sp|P11568|HGDC_ACIFE Activator of (R)-2-hydroxyglutaryl-CoA... 31 1.0
sp|P82176|IMPI_GALME Inducible metalloproteinase inhibitor ... 30 2.3
sp|O57460|TLL1_BRARE Dorsal-ventral patterning tolloid-like... 29 3.9
sp|Q60315|Y004_METJA Hypothetical protein MJ0004 29 3.9
sp|P24043|LAMA2_HUMAN Laminin alpha-2 chain precursor (Lami... 28 5.1
sp|O75095|EGFL3_HUMAN Multiple EGF-like-domain protein 3 pr... 28 5.1
sp|Q8XIG8|Y2152_CLOPE Hypothetical UPF0246 protein CPE2152 28 6.6
sp|P61506|TXL2_LASPA Lasiotoxin 2 (LpTX2) 28 6.6
sp|Q60675|LAMA2_MOUSE Laminin alpha-2 chain precursor (Lami... 28 8.6
>sp|P20063|LDLR_RABIT Low-density lipoprotein receptor (LDL receptor)
Length = 837
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 40 DVSYEEIKKCDLDGFKCNDKCAKGDGDCSHKCLD 141
D S E IK+C ++C +G+G CSH C D
Sbjct: 291 DWSDEPIKEC------ATNECMRGNGGCSHTCFD 318
>sp|P11568|HGDC_ACIFE Activator of (R)-2-hydroxyglutaryl-CoA dehydratase
(2-hydroxyglutaryl-CoA dehydratase component A)
Length = 260
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 19 IISIGALDVSYEEIKKCDLDGFKCNDKCAKGDG 117
+I IG DV ++ + F+ NDKCA G G
Sbjct: 100 VIDIGGQDVKVIHVENGTMTNFQMNDKCAAGTG 132
>sp|P82176|IMPI_GALME Inducible metalloproteinase inhibitor protein precursor [Contains:
IMPI alpha]
Length = 170
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +1
Query: 40 DVSYEEIKKCDLDGFKCNDKCAKGDG---DCSHKCLDQIKACKK 162
D+ + C + +CNDKC DG D + KC+ IK C K
Sbjct: 43 DLHIQNKTNCPIINIRCNDKCYCEDGYARDVNGKCI-PIKDCPK 85
>sp|O57460|TLL1_BRARE Dorsal-ventral patterning tolloid-like protein 1 precursor (Mini
fin protein)
Length = 1022
Score = 28.9 bits (63), Expect = 3.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 82 FKCNDKCAKGDGDCSHKCLDQI 147
F D+C+K +G C H+C++ I
Sbjct: 737 FSDKDECSKDNGGCQHECINTI 758
>sp|Q60315|Y004_METJA Hypothetical protein MJ0004
Length = 243
Score = 28.9 bits (63), Expect = 3.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +1
Query: 31 GALDVSYEEIK--KCDLDG----FKCNDKCAKGDGDCSHKCLDQIKACKKALH 171
G +D+ ++ K K D +G F +DKCA G G K LD +K K ++
Sbjct: 91 GVIDIGGQDTKVLKIDKNGKVVDFILSDKCAAGTGKFLEKALDILKIDKNEIN 143
>sp|P24043|LAMA2_HUMAN Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
chain)
Length = 3110
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 1 FVFSIIIISIGALDVSYEEIKKCDLDGFKCNDKCAKGDGDCSHK-CLDQIKACKKALH 171
+ +S+ IS+G + + Y + C LD +C +C H C D C H
Sbjct: 274 YYYSVKDISVGGMCICYGHARACPLDPATNKSRC-----ECEHNTCGDSCDQCCPGFH 326
>sp|O75095|EGFL3_HUMAN Multiple EGF-like-domain protein 3 precursor (Multiple epidermal
growth factor-like domains 6)
Length = 1229
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 76 DGFKCND--KCAKGDGDCSHKCLDQIKACKKALHADH 180
DG C D +CA G C+H CL+ + K HA +
Sbjct: 174 DGKACEDVDECAAGLAQCAHGCLNTQGSFKCVCHAGY 210
>sp|Q8XIG8|Y2152_CLOPE Hypothetical UPF0246 protein CPE2152
Length = 254
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 52 EEIKKCDLDGFKCNDKCAKGD 114
E+IK DLDG++ N++ ++GD
Sbjct: 227 EDIKNFDLDGYEFNERLSEGD 247
>sp|P61506|TXL2_LASPA Lasiotoxin 2 (LpTX2)
Length = 49
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 52 EEIKKCDLDGFKCNDKCAKGDGDCSHKCLDQIKACKK 162
+E K C G KCNDK K CS ++K C K
Sbjct: 12 KEGKPCKPKGCKCNDKDNKDHKKCSGGWRCKLKLCLK 48
>sp|Q60675|LAMA2_MOUSE Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
chain)
Length = 3106
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +1
Query: 1 FVFSIIIISIGALDVSYEEIKKCDLDGFKCNDKCAKGDGDCSHKC 135
+ +S+ IS+G + + Y + C LD +C C C
Sbjct: 270 YYYSVKDISVGGMCICYGHARACPLDPATNKSRCECEHNTCGESC 314
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,159,396
Number of Sequences: 369166
Number of extensions: 376345
Number of successful extensions: 1228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 68,354,980
effective HSP length: 49
effective length of database: 59,302,965
effective search space used: 1719785985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)