Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_L14
(742 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60936|CABC1_MOUSE Chaperone-activity of bc1 complex-lik... 273 4e-73
sp|Q8NI60|CABC1_HUMAN Chaperone-activity of bc1 complex-lik... 268 9e-72
sp|Q18486|YLC4_CAEEL Hypothetical protein C35D10.4 in chrom... 262 6e-70
sp|Q92338|ABCI_SCHPO Protein ABC1 homolog, mitochondrial pr... 222 7e-58
sp|P27697|ABC1_YEAST Protein ABC1, mitochondrial precursor 220 4e-57
sp|P73627|Y1770_SYNY3 Hypothetical protein sll1770 45 2e-04
sp|Q55884|Y095_SYNY3 Hypothetical protein sll0095 43 8e-04
sp|P96936|Y647_MYCTU Hypothetical protein Rv0647c/MT0675 42 0.002
sp|P73121|Y1919_SYNY3 Hypothetical protein slr1919 41 0.003
sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis prote... 36 0.12
>sp|Q60936|CABC1_MOUSE Chaperone-activity of bc1 complex-like, mitochondrial precursor
(Chaperone-ABC1-like)
Length = 645
Score = 273 bits (698), Expect = 4e-73
Identities = 126/242 (52%), Positives = 174/242 (71%)
Frame = +3
Query: 3 KRELAWECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVS 182
+REL ECDY+REA + F + + P F VP+++ EL + VLTTE + G LD+
Sbjct: 396 RRELTLECDYQREAAYAKKFRELLKDHPFFYVPEIVDELCSPHVLTTELISGFPLDQAEG 455
Query: 183 MDQEIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKSF 362
+ QE+R+ + ++ LCL+ELFEF MQTDPNW+NF ++ ++ K+ L+DFGA+REY +SF
Sbjct: 456 LSQEVRNEICYNILVLCLRELFEFHVMQTDPNWSNFFYDPQQHKVALLDFGATREYDRSF 515
Query: 363 VDDYLRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSLPFDF 542
D Y++VI+ A+ Q+++ +LK S ++ FLTG+E + ME AH+DA+ ILGE F S PFDF
Sbjct: 516 TDLYIQVIRAAADQDREAVLKKSIEMKFLTGYEVKAMEDAHLDAILILGEAFASEEPFDF 575
Query: 543 GRQSTTKRIKELIPVMLEHRLTSPPEETYSLHRKLSGGFLLCSKLKARVSCSQLFNKIYD 722
G QSTT++I LIPVML+HRL PPEETYSLHRK+ G FL+CSKLKAR C +F + Y
Sbjct: 576 GTQSTTEKIHNLIPVMLKHRLIPPPEETYSLHRKMGGSFLICSKLKARFPCKAMFEEAYS 635
Query: 723 KY 728
Y
Sbjct: 636 NY 637
>sp|Q8NI60|CABC1_HUMAN Chaperone-activity of bc1 complex-like, mitochondrial precursor
(Chaperone-ABC1-like)
Length = 647
Score = 268 bits (686), Expect = 9e-72
Identities = 126/242 (52%), Positives = 171/242 (70%)
Frame = +3
Query: 3 KRELAWECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVS 182
+RELA ECDY+REA F D P F VP+++ EL + VLTTE V G LD+
Sbjct: 399 RRELALECDYQREAACARKFRDLLKGHPFFYVPEIVDELCSPHVLTTELVSGFPLDQAEG 458
Query: 183 MDQEIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKSF 362
+ QEIR+ + ++ LCL+ELFEF MQTDPNW+NF ++ ++ K+ L+DFGA+REY +SF
Sbjct: 459 LSQEIRNEICYNILVLCLRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFGATREYDRSF 518
Query: 363 VDDYLRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSLPFDF 542
D Y+++I+ A+ ++++ + S ++ FLTG+E ++ME AH+DA+ ILGE F S PFDF
Sbjct: 519 TDLYIQIIRAAADRDRETVRAKSIEMKFLTGYEVKVMEDAHLDAILILGEAFASDEPFDF 578
Query: 543 GRQSTTKRIKELIPVMLEHRLTSPPEETYSLHRKLSGGFLLCSKLKARVSCSQLFNKIYD 722
G QSTT++I LIPVML HRL PPEETYSLHRK+ G FL+CSKLKAR C +F + Y
Sbjct: 579 GTQSTTEKIHNLIPVMLRHRLVPPPEETYSLHRKMGGSFLICSKLKARFPCKAMFEEAYS 638
Query: 723 KY 728
Y
Sbjct: 639 NY 640
>sp|Q18486|YLC4_CAEEL Hypothetical protein C35D10.4 in chromosome III
Length = 755
Score = 262 bits (670), Expect = 6e-70
Identities = 130/248 (52%), Positives = 177/248 (71%), Gaps = 4/248 (1%)
Frame = +3
Query: 3 KRELAWECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVS 182
+REL ECDY REA+ F + A+ VP+VI ELS+ +VLTTE V+G +D CV
Sbjct: 498 RRELKQECDYEREARAMKKFRELIADWQDVYVPEVIDELSSSRVLTTELVYGKPVDACVE 557
Query: 183 MDQEIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVE----KGKIYLIDFGASREY 350
Q +RD++ + + LCLKE+F +R MQTDPNW+NF + ++ L+DFGASR Y
Sbjct: 558 EPQVVRDYIAGKFIELCLKEIFLWRFMQTDPNWSNFFLGKHPKTGEPRLVLLDFGASRAY 617
Query: 351 QKSFVDDYLRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSL 530
K FVD Y+ +IK A +K++I++YSR++GFLTG+ET +ME AH+++V I+GE S+
Sbjct: 618 GKKFVDIYMNIIKSAYDGDKKKIIEYSREIGFLTGYETSVMEDAHVESVMIMGETLASNH 677
Query: 531 PFDFGRQSTTKRIKELIPVMLEHRLTSPPEETYSLHRKLSGGFLLCSKLKARVSCSQLFN 710
P++F Q T RI++LIPVMLEHRLTSPPEE YSLHRKLSG +LL +KLKA VSC LF+
Sbjct: 678 PYNFANQDVTMRIQKLIPVMLEHRLTSPPEEIYSLHRKLSGCYLLAAKLKATVSCGGLFH 737
Query: 711 KIYDKYKF 734
+I++ Y F
Sbjct: 738 EIHENYVF 745
>sp|Q92338|ABCI_SCHPO Protein ABC1 homolog, mitochondrial precursor
Length = 610
Score = 222 bits (566), Expect = 7e-58
Identities = 114/244 (46%), Positives = 157/244 (64%), Gaps = 2/244 (0%)
Frame = +3
Query: 3 KRELAWECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVS 182
++EL WECDY REA F F ND F VP V E S V+T E++HGI+L K
Sbjct: 366 RKELKWECDYEREAAFAERFGSLLKNDSDFKVPMVFREASGPSVITLEYLHGIALGK-QK 424
Query: 183 MDQEIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKSF 362
Q R+ +G + + CL+E+ E+ MQTDPNW+NFL+N + KI L+DFGAS EY + F
Sbjct: 425 YSQATRNHIGYLLTKQCLREISEYHFMQTDPNWSNFLYNGKTKKIELLDFGASIEYDEKF 484
Query: 363 VDDYLRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSLP--F 536
+ Y R++ A+ +N+++ K S +LG+L E+ M AHI+++ L E F P +
Sbjct: 485 IKKYCRLLLAAAHRNREKCKKLSVELGYLNNHESAQMIDAHINSIFTLAEPFAFDAPDVY 544
Query: 537 DFGRQSTTKRIKELIPVMLEHRLTSPPEETYSLHRKLSGGFLLCSKLKARVSCSQLFNKI 716
DFG Q+ T R+K+ IPVML+ RL PPEETYSLHR+LSG FLLC+KL A+V C +LF+ +
Sbjct: 545 DFGDQTITARVKQQIPVMLDLRLQPPPEETYSLHRRLSGHFLLCAKLGAKVRCKELFSGM 604
Query: 717 YDKY 728
Y
Sbjct: 605 LKHY 608
>sp|P27697|ABC1_YEAST Protein ABC1, mitochondrial precursor
Length = 501
Score = 220 bits (560), Expect = 4e-57
Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 2/241 (0%)
Frame = +3
Query: 3 KRELAWECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVS 182
+ EL WECDY REA+ F +DP F VP V PE +T+ ++T + G + K
Sbjct: 257 RTELKWECDYNREARALQKFEALLKDDPAFEVPHVFPEYTTDNIITMTRMEGTEIMKLPK 316
Query: 183 MDQEIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKSF 362
QE ++++ +MRLCL+E+ F+ MQTDPNWANFL+N KI L+DFGASR + + F
Sbjct: 317 ASQETKNFISENIMRLCLEEIATFKYMQTDPNWANFLYNGRTKKIELLDFGASRPFAEDF 376
Query: 363 VDDYLRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSL--PF 536
+ Y +++ YA+L++++ + S +LG+LTG E+Q M+ AH+D+V LGE F + F
Sbjct: 377 ILKYRKLLTYATLRDRKGAYEMSVQLGYLTGLESQSMKDAHVDSVLTLGEPFRGDVDKSF 436
Query: 537 DFGRQSTTKRIKELIPVMLEHRLTSPPEETYSLHRKLSGGFLLCSKLKARVSCSQLFNKI 716
DF Q+ + RI+ I +ML RL PPEETYSLHRK SG FLLC+++ A V C++LF +I
Sbjct: 437 DFKDQTVSDRIRGNIGLMLNERLCPPPEETYSLHRKFSGIFLLCARMGASVHCAKLFKEI 496
Query: 717 Y 719
+
Sbjct: 497 F 497
>sp|P73627|Y1770_SYNY3 Hypothetical protein sll1770
Length = 585
Score = 45.4 bits (106), Expect = 2e-04
Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 3/210 (1%)
Frame = +3
Query: 9 ELAW-ECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSM 185
++ W E DY RE + F F + VP+V ++ Q+LT E++ GI + ++
Sbjct: 227 KILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTSTQILTLEYLPGIKISHYDAL 286
Query: 186 DQE--IRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKS 359
+ R + R L +L DP+ N + E G++ DFG E
Sbjct: 287 EAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAGELIFYDFGMMGEITPD 346
Query: 360 FVDDYLRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSLPFD 539
+ + + + +N ++I+ LG L ET+ M +L PF+
Sbjct: 347 TKNKLMDTLFGVAEKNAERIVNSLVALGALK--ETEDMGPIRRSVQFLLDNFMDK--PFE 402
Query: 540 FGRQSTTKRIKELIPVMLEHRLTSPPEETY 629
QS TK +L + + P T+
Sbjct: 403 --EQSITKISDDLYEIAYDQPFRFPATFTF 430
>sp|Q55884|Y095_SYNY3 Hypothetical protein sll0095
Length = 567
Score = 43.1 bits (100), Expect = 8e-04
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Frame = +3
Query: 21 ECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQEIR 200
E DY E + F FA+ P VP++ + +T VLT E++ GI +D D++
Sbjct: 209 EIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVD-----DRQAL 263
Query: 201 DWVGSQM-----MRLC--LKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKS 359
+ G + +C LK+L Q+DP+ N + +G + DFG E +
Sbjct: 264 ETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVD-SQGDLIFYDFGTMAEVKII 322
Query: 360 FVDDYLRVIKYASLQNKQQILK 425
D ++ ++ Q+L+
Sbjct: 323 AKDQMVQTFFAVLRKDTNQVLE 344
>sp|P96936|Y647_MYCTU Hypothetical protein Rv0647c/MT0675
Length = 488
Score = 42.0 bits (97), Expect = 0.002
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Frame = +3
Query: 12 LAWECDYRREAQFGSWFADKFANDPI---FVVPKVIPELSTEQVLTTEFVHGISLDKCVS 182
LA E D+R EAQ + P+ VP+V + +TE+VLT E VHGI +D +
Sbjct: 236 LAEELDFRLEAQSMEAWVSHLHASPLGKNIRVPQVHWDFTTERVLTMERVHGIRIDNAAA 295
Query: 183 MDQEIRDWVGSQMMRLCLKELFE----FRTMQTDPNWANFLFNVEKGKIYLIDFG 335
+ + D G ++++ L +FE D + N L+ E G+I DFG
Sbjct: 296 IRKAGFD--GVELVKALLFSVFEGGLRHGLFHGDLHAGN-LYVDEAGRIVFFDFG 347
>sp|P73121|Y1919_SYNY3 Hypothetical protein slr1919
Length = 566
Score = 41.2 bits (95), Expect = 0.003
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Frame = +3
Query: 21 ECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISL---DKCVSMDQ 191
E DY E + FA+ F D VP + + S ++VLT E++ G L DK +
Sbjct: 217 EIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIRAAGL 276
Query: 192 EIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFG 335
+ D + + L++L E DP+ N LF G++ IDFG
Sbjct: 277 DPSDIIRIGVTS-GLRQLLEHGFFHADPHPGN-LFATLDGRMAYIDFG 322
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein ubiB
Length = 508
Score = 35.8 bits (81), Expect = 0.12
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Frame = +3
Query: 21 ECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQEIR 200
E D EA S F + +VP+V + S+ +VLT E++HGI V + +R
Sbjct: 201 ELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSREVLTLEWMHGIP----VGQIERLR 256
Query: 201 DWVGSQMMRLC-------LKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFG 335
+ G + +L ++F D + N +F G+ +DFG
Sbjct: 257 E-AGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGN-IFVAADGRYIALDFG 306
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,674,583
Number of Sequences: 369166
Number of extensions: 1668187
Number of successful extensions: 4661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4655
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)