Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_L09
(899 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 566 e-161
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 566 e-161
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 565 e-161
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 561 e-159
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 561 e-159
sp|P02554|TBB_PIG Tubulin beta chain 560 e-159
sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin) 560 e-159
sp|O17449|TBB1_MANSE Tubulin beta-1 chain (Beta-1 tubulin) 560 e-159
sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain 560 e-159
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 559 e-159
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 567 bits (1460), Expect = e-161
Identities = 274/299 (91%), Positives = 280/299 (93%)
Frame = +3
Query: 3 HLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVL 182
HLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRAVL
Sbjct: 6 HLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVL 65
Query: 183 VDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 362
VDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 363 SCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 542
SCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 543 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 722
TLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 723 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 899
LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD
Sbjct: 246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 304
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 566 bits (1458), Expect = e-161
Identities = 273/299 (91%), Positives = 280/299 (93%)
Frame = +3
Query: 3 HLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVL 182
H+QAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRAVL
Sbjct: 6 HMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVL 65
Query: 183 VDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 362
VDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 363 SCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 542
SCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 543 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 722
TLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 723 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 899
LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD
Sbjct: 246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 304
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 565 bits (1455), Expect = e-161
Identities = 273/299 (91%), Positives = 279/299 (93%)
Frame = +3
Query: 3 HLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVL 182
HLQAGQCGNQIG+KFWEVISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYVPRAVL
Sbjct: 6 HLQAGQCGNQIGAKFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRAVL 65
Query: 183 VDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 362
VDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 363 SCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 542
SCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 543 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 722
TLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 723 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 899
LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD
Sbjct: 246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 304
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 561 bits (1445), Expect = e-159
Identities = 271/299 (90%), Positives = 279/299 (93%)
Frame = +3
Query: 3 HLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVL 182
HLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRAVL
Sbjct: 6 HLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVL 65
Query: 183 VDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 362
VDLEPGTMDSVR+GPF Q+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFRQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 363 SCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 542
SCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 543 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 722
TLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 723 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 899
LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVP+LTQQMFDAKNMMAAC+
Sbjct: 246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPDLTQQMFDAKNMMAACE 304
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 561 bits (1445), Expect = e-159
Identities = 269/299 (89%), Positives = 280/299 (93%)
Frame = +3
Query: 3 HLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVL 182
H+QAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEA+GGKYVPRA+L
Sbjct: 6 HIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAIL 65
Query: 183 VDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 362
VDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 363 SCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 542
SCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 543 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 722
TLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 723 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 899
LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMMAACD
Sbjct: 246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACD 304
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 560 bits (1444), Expect = e-159
Identities = 269/299 (89%), Positives = 279/299 (93%)
Frame = +3
Query: 3 HLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVL 182
H+QAGQCGNQIG+KFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G KYVPRA+L
Sbjct: 6 HIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAIL 65
Query: 183 VDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 362
VDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+E
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 125
Query: 363 SCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 542
SCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 543 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 722
TLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 723 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 899
LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD
Sbjct: 246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 304
>sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 446
Score = 560 bits (1444), Expect = e-159
Identities = 270/299 (90%), Positives = 278/299 (92%)
Frame = +3
Query: 3 HLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVL 182
HLQAGQCGNQIGSKFWEVISDEHGIDPTG+YHGDSDLQL+RINVYYNEASGGKYVPRAVL
Sbjct: 6 HLQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEASGGKYVPRAVL 65
Query: 183 VDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 362
VDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 363 SCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 542
CDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA
Sbjct: 126 GCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 543 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 722
TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ
Sbjct: 186 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 723 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 899
LNADLRKLAVNMVPFPRLHFF+PGFAPLTSRG QQYR+LTVPELTQQMFD+KNMMAACD
Sbjct: 246 LNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGGQQYRSLTVPELTQQMFDSKNMMAACD 304
>sp|O17449|TBB1_MANSE Tubulin beta-1 chain (Beta-1 tubulin)
Length = 447
Score = 560 bits (1442), Expect = e-159
Identities = 268/299 (89%), Positives = 278/299 (92%)
Frame = +3
Query: 3 HLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVL 182
H+QAGQCGNQIG+KFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEASGGKYVPRA+L
Sbjct: 6 HIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAIL 65
Query: 183 VDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 362
VDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 363 SCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 542
SCDCLQGFQ KIREEYPDRIMNT+SVVPSPKVSDTVVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 185
Query: 543 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 722
TLSVHQLVENTDET+CIDNEALYDICFRTLKL+TPTYGDLNHLVS TMSGVTTCLRFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQ 245
Query: 723 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 899
LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD
Sbjct: 246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 304
>sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain
Length = 444
Score = 560 bits (1442), Expect = e-159
Identities = 270/299 (90%), Positives = 278/299 (92%)
Frame = +3
Query: 3 HLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVL 182
HLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GG YVPRAVL
Sbjct: 6 HLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVL 65
Query: 183 VDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 362
VDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLDVVRKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAE 125
Query: 363 SCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 542
SCDCLQGFQ KIREE+PDRIMNTFSVVPSPKVSDTVVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 543 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 722
TLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 723 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 899
LNADLRKLAVNMVPFPRLHFFMPG APLTSRGSQQYRALTVPELTQQMFDAKNMMAACD
Sbjct: 246 LNADLRKLAVNMVPFPRLHFFMPGLAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 304
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 559 bits (1441), Expect = e-159
Identities = 270/299 (90%), Positives = 279/299 (93%)
Frame = +3
Query: 3 HLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVL 182
HLQAGQCGNQIG+KFWEVISDEHGIDP+GTYHGD++LQLERINVYYNEA+GGKYVPRAVL
Sbjct: 6 HLQAGQCGNQIGAKFWEVISDEHGIDPSGTYHGDNELQLERINVYYNEATGGKYVPRAVL 65
Query: 183 VDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 362
VDLEPGTMDSVR+G FGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE
Sbjct: 66 VDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 363 SCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 542
SCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 543 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 722
TLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 723 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 899
LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD
Sbjct: 246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACD 304
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,894,638
Number of Sequences: 369166
Number of extensions: 2160737
Number of successful extensions: 6243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5678
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)