Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_L06
(908 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99299|YP58_YEAST Hypothetical protein YPL158C 36 0.17
sp|Q15648|PPRB_HUMAN Peroxisome proliferator-activated rece... 35 0.22
sp|P07789|COTB_BACSU Spore coat protein B 34 0.50
sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [... 34 0.65
sp|Q59X11|ATG2_CANAL Autophagy-related protein 2 33 1.4
sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein precurso... 32 1.9
sp|P32583|SRP40_YEAST Suppressor protein SRP40 32 2.5
sp|Q00798|RBP1_PLAVB Reticulocyte binding protein 1 precursor 32 2.5
sp|Q25460|FP1_MYTED Adhesive plaque matrix protein (Polyphe... 32 2.5
sp|P13744|11SB_CUCMA 11S globulin beta subunit precursor [C... 31 4.2
>sp|Q99299|YP58_YEAST Hypothetical protein YPL158C
Length = 758
Score = 35.8 bits (81), Expect = 0.17
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 7/182 (3%)
Frame = +2
Query: 56 KRFNSDQFKSSTPISTKVNTRPKNDSAYSSFVSQKAYVN--VTSNSSSIKESITNYESPG 229
+R NS ++++ ++ P N+ +SF+S V+ VT NSS S P
Sbjct: 417 RRTNSSIRRAASILTASATMTPANNK--NSFISVPDNVSHAVTRNSSMYSRSRLVRSKPS 474
Query: 230 TSFSSRNSALNDDELEECFKVSELENDRYS----GQFFISDSCLRRSARNSPWTVRPGSA 397
T+ N+ + KV L +RYS ++ I S +R +
Sbjct: 475 TAL---NAIARQPSIVVENKVIPLSMNRYSIKEEDEYVIDTSSMRELS------------ 519
Query: 398 PLNEE-EEDSDKEASNYFCNYKDAFPMSPELSEVTISFRSRIRHASMTDGEQRNELIANK 574
P+N D D+E+S + NY DA + ++ + + I++ + E NE N
Sbjct: 520 PVNSVCSSDYDRESSESYSNYADAMETTEVDNKDRVECNNEIQNVDANNEETSNEESYNL 579
Query: 575 LR 580
++
Sbjct: 580 MK 581
>sp|Q15648|PPRB_HUMAN Peroxisome proliferator-activated receptor binding protein (PBP)
(PPAR binding protein) (Thyroid hormone
receptor-associated protein complex 220 kDa component)
(Trap220) (Thyroid receptor interacting protein 2)
(TRIP2) (p53 regulatory protein RB18A) (Vitamin D
receptor-interacting protein complex component DRIP205)
(Activator-recruited cofactor 205 kDa component) (ARC205)
Length = 1581
Score = 35.4 bits (80), Expect = 0.22
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 1/141 (0%)
Frame = +2
Query: 86 STPISTKVNTR-PKNDSAYSSFVSQKAYVNVTSNSSSIKESITNYESPGTSFSSRNSALN 262
+TP K+ + PK S Y + S SSS +S ++ S +S +S + +
Sbjct: 1056 ATPPIPKITIQIPKGTVMVGKPSSHSQYTSSGSVSSSGSKSHHSHSSSSSSSASTSGKMK 1115
Query: 263 DDELEECFKVSELENDRYSGQFFISDSCLRRSARNSPWTVRPGSAPLNEEEEDSDKEASN 442
+ E S+L + YS Q S + S+++ +PGS+P+ + S ++
Sbjct: 1116 SSKSEGSSS-SKLSSSMYSSQGSSGSSQSKNSSQSGG---KPGSSPITKHGLSSGSSSTK 1171
Query: 443 YFCNYKDAFPMSPELSEVTIS 505
K + M+P LS+ IS
Sbjct: 1172 MKPQGKPSSLMNPSLSKPNIS 1192
>sp|P07789|COTB_BACSU Spore coat protein B
Length = 380
Score = 34.3 bits (77), Expect = 0.50
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 3/134 (2%)
Frame = +2
Query: 110 NTRPKNDSAYSSFVSQKAYVNVTSNSSSIKESITNYESPGTSFSSRNSALNDDELEECFK 289
N ND +SF+S K+Y + S+ S+K S G S S++S+ + + K
Sbjct: 239 NQEDNNDKDSNSFISSKSYSSSKSSKRSLKSSDDQSSKSGRSSRSKSSSKSS---KRSLK 295
Query: 290 VSELENDRYSGQFFISDSCLRRSARNSPWTVRPGSAPLNEEEEDSDKEAS---NYFCNYK 460
S+ ++ + SG+ S S + S R+ + S SD ++S Y + K
Sbjct: 296 SSDYQSSK-SGRSSRSKSSSKSSKRSLKSSDYQSSKSSKRSPRSSDYQSSRSPGYSSSIK 354
Query: 461 DAFPMSPELSEVTI 502
+ + S TI
Sbjct: 355 SSGKQKEDYSYETI 368
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin phosphoprotein
(Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
Length = 1253
Score = 33.9 bits (76), Expect = 0.65
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Frame = +2
Query: 65 NSDQFKSSTPISTKVNTRPKNDSAYSSFVSQKAYVNVTSNSSSIKESITNYESPGTSFSS 244
+S S+ S N+ NDS+ SS S + + +SNSS +S + +S + S+
Sbjct: 766 DSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSS---DSSDSSDSSDSDSSN 822
Query: 245 RNSALNDDELEECFKVSELENDRYSGQFFISDSCLRR-SARNSPWTVRPGSAPLNEEEED 421
+ + N + + S+ + S SDS R S+ +S + S+ ++ +
Sbjct: 823 SSDSSNSSDSSDSSNSSDSSDSSDSSDSSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDS 882
Query: 422 SDKEASNYFCNYKDA 466
SD SN N D+
Sbjct: 883 SDSSDSNESSNSSDS 897
>sp|Q59X11|ATG2_CANAL Autophagy-related protein 2
Length = 1856
Score = 32.7 bits (73), Expect = 1.4
Identities = 30/133 (22%), Positives = 58/133 (43%)
Frame = +2
Query: 116 RPKNDSAYSSFVSQKAYVNVTSNSSSIKESITNYESPGTSFSSRNSALNDDELEECFKVS 295
+ +N+ SS + KA + ++S K+ +N E L+D+++++ +++
Sbjct: 1650 KSQNNLLVSSQILNKASTKIETHSYDTKKLYSNIE------------LDDEDMDDN-RIN 1696
Query: 296 ELENDRYSGQFFISDSCLRRSARNSPWTVRPGSAPLNEEEEDSDKEASNYFCNYKDAFPM 475
+ + S F+ + A+ P T + L EEEED D++ Y+D
Sbjct: 1697 GINKELLSKSIFLLAPAEEKLAKLQPHT-KGNHEGLTEEEEDEDEDEEYQLYAYED---- 1751
Query: 476 SPELSEVTISFRS 514
EL E +S S
Sbjct: 1752 EEELQEKLVSLYS 1764
>sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein precursor (Foot protein 1) (MGFP1)
(MGFP-1)
Length = 751
Score = 32.3 bits (72), Expect = 1.9
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 283 PSYPSTYKAKPSYPPTYKAKPSYPPTYK-AKPTYPSTYKAKPSY 325
Score = 32.3 bits (72), Expect = 1.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPV---AAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ YP A P YP TY +PSY
Sbjct: 633 PSYPPTYKAKPSYPPTYKAKPSYPATYPSTYKAKPSYPPTYKAKPSY 679
Score = 32.0 bits (71), Expect = 2.5
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P + T Y A P YP TY +PSY
Sbjct: 393 PSYLPTYKAKPSYPPTYKAKPRYPTTYK-AKPSYPPTYKAKPSY 435
Score = 31.6 bits (70), Expect = 3.2
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS + Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 493 PSYSSTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 535
Score = 31.2 bits (69), Expect = 4.2
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ ++ Y P Y A P++ Y A P YP TY +PSY
Sbjct: 553 PSYPQTYKAKSSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 595
Score = 30.8 bits (68), Expect = 5.5
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 758 YENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
Y+ + Y P Y A P++ T Y A P YP+TY +PSY
Sbjct: 259 YKPKISYPPTYKAKPSYPTSYR-AKPSYPSTYKAKPSY 295
Score = 30.8 bits (68), Expect = 5.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P + + Y A P YP TY +PSY
Sbjct: 293 PSYPPTYKAKPSYPPTYKAKPTYPSTYK-AKPSYPPTYKAKPSY 335
Score = 30.8 bits (68), Expect = 5.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGY-----------IAPAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ +T Y P Y P++ IY A P YP TY +PSY
Sbjct: 343 PSYPPSYKPKTTYPPSYKPKISYPPTYKAKPSYPPIYK-AKPSYPPTYKAKPSY 395
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 433 PSYPPTYKAKLSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 475
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 503 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 545
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 573 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 615
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 583 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 625
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 593 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 635
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 603 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 645
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 613 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 655
>sp|P32583|SRP40_YEAST Suppressor protein SRP40
Length = 406
Score = 32.0 bits (71), Expect = 2.5
Identities = 30/126 (23%), Positives = 52/126 (41%)
Frame = +2
Query: 65 NSDQFKSSTPISTKVNTRPKNDSAYSSFVSQKAYVNVTSNSSSIKESITNYESPGTSFSS 244
+SD SS+ S+ ++ +DS SS + + +S+SSS ES + ES +
Sbjct: 70 SSDSESSSSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKR 129
Query: 245 RNSALNDDELEECFKVSELENDRYSGQFFISDSCLRRSARNSPWTVRPGSAPLNEEEEDS 424
+ N+D E +E E+ S S S S S+ + + +S
Sbjct: 130 ARESDNEDAKETKKAKTEPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSES 189
Query: 425 DKEASN 442
D E+ +
Sbjct: 190 DSESDS 195
>sp|Q00798|RBP1_PLAVB Reticulocyte binding protein 1 precursor
Length = 2833
Score = 32.0 bits (71), Expect = 2.5
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +2
Query: 101 TKVNTRPKNDSAYSSFVSQKAYVNVTSNSSSIKESITNYESPGTSFSSRNSALNDDELEE 280
+K N + ++ S+F+SQKAYV T N+S K++ + S +SF + N ++ L
Sbjct: 51 SKHNRVKRRNAKISNFLSQKAYVKETDNASG-KDAEGSRPSHDSSFVNLNGHVDGKSLSY 109
Query: 281 CFKVSE 298
V E
Sbjct: 110 SVHVKE 115
>sp|Q25460|FP1_MYTED Adhesive plaque matrix protein (Polyphenolic adhesive protein)
(Foot protein 1) (MEFP1)
Length = 875
Score = 32.0 bits (71), Expect = 2.5
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 605 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPTYPSTYKAKPSY 647
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 175 PSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSY 223
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 285 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 327
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 315 PSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSY 363
Score = 30.4 bits (67), Expect = 7.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 868
P+ Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 423 PTYPSTYKAKPSYPPSYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSY 471
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 740 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 868
PS Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 559 PSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYKAKPTYPSTYKAKPSY 607
>sp|P13744|11SB_CUCMA 11S globulin beta subunit precursor [Contains: 11S globulin gamma
chain (11S globulin acidic chain); 11S globulin delta
chain (11S globulin basic chain)]
Length = 480
Score = 31.2 bits (69), Expect = 4.2
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 805 MCRSNISRFVYSAIFINYCLAWTASLVDRCSSWVNNGSWIIVSHNY 668
M RS++ F+ A+FIN CL S +++ S W GS + H Y
Sbjct: 1 MARSSLFTFLCLAVFINGCL----SQIEQQSPWEFQGSEVWQQHRY 42
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,198,006
Number of Sequences: 369166
Number of extensions: 1526646
Number of successful extensions: 4758
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4692
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)