Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_K22
(442 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38652|PGM1_RAT Phosphoglucomutase-1 (Glucose phosphomut... 119 2e-27
sp|Q9D0F9|PGM1_MOUSE Phosphoglucomutase-1 (Glucose phosphom... 118 6e-27
sp|Q4R5E4|PGM1_MACFA Phosphoglucomutase-1 (Glucose phosphom... 117 1e-26
sp|P36871|PGM1_HUMAN Phosphoglucomutase-1 (Glucose phosphom... 116 2e-26
sp|Q9VUY9|PGM_DROME Phosphoglucomutase (Glucose phosphomuta... 116 2e-26
sp|Q7KHA1|PGM_DROSI Phosphoglucomutase (Glucose phosphomuta... 116 2e-26
sp|P00949|PGM1_RABIT Phosphoglucomutase-1 (Glucose phosphom... 116 2e-26
sp|Q9SNX2|PGMC_BROIN Phosphoglucomutase, cytoplasmic (Gluco... 115 4e-26
sp|O49299|PGMC1_ARATH Probable phosphoglucomutase, cytoplas... 113 2e-25
sp|Q9SM59|PGMP_PEA Phosphoglucomutase, chloroplast precurso... 112 5e-25
>sp|P38652|PGM1_RAT Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 119 bits (299), Expect = 2e-27
Identities = 55/92 (59%), Positives = 75/92 (81%)
Frame = +1
Query: 7 ADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVAHI 186
ADNF+Y+DP+D S +KNQG+R++F+DGSR+I+RLSGTGS+GATIR+YIDSY K+A +
Sbjct: 471 ADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDAAKINQ 530
Query: 187 SSEVALKPLVEIGLSICQIKQITGRNAPTVIT 282
+V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 531 DPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|Q9D0F9|PGM1_MOUSE Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 118 bits (295), Expect = 6e-27
Identities = 54/92 (58%), Positives = 74/92 (80%)
Frame = +1
Query: 7 ADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVAHI 186
ADNF+Y+DP+D S +KNQG+R++F+DGSR+I+RLSGTGS+GATIR+YIDSY K+ +
Sbjct: 471 ADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDVAKINQ 530
Query: 187 SSEVALKPLVEIGLSICQIKQITGRNAPTVIT 282
+V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 531 DPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|Q4R5E4|PGM1_MACFA Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 117 bits (293), Expect = 1e-26
Identities = 53/92 (57%), Positives = 75/92 (81%)
Frame = +1
Query: 7 ADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVAHI 186
ADNF+Y+DP+D S ++NQG+R++F+DGSR+I+RLSGTGS+GATIR+YIDSY K+ +
Sbjct: 471 ADNFEYSDPVDGSISRNQGLRLIFTDGSRIIFRLSGTGSAGATIRLYIDSYEKDVAKINQ 530
Query: 187 SSEVALKPLVEIGLSICQIKQITGRNAPTVIT 282
+V L PL+ I L + Q+++ TGR+APTVIT
Sbjct: 531 DPQVMLAPLISIALKVSQLQERTGRSAPTVIT 562
>sp|P36871|PGM1_HUMAN Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 116 bits (291), Expect = 2e-26
Identities = 52/92 (56%), Positives = 74/92 (80%)
Frame = +1
Query: 7 ADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVAHI 186
ADNF+Y+DP+D S ++NQG+R++F+DGSR+++RLSGTGS+GATIR+YIDSY K+ +
Sbjct: 471 ADNFEYSDPVDGSISRNQGLRLIFTDGSRIVFRLSGTGSAGATIRLYIDSYEKDVAKINQ 530
Query: 187 SSEVALKPLVEIGLSICQIKQITGRNAPTVIT 282
+V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 531 DPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|Q9VUY9|PGM_DROME Phosphoglucomutase (Glucose phosphomutase) (PGM)
Length = 560
Score = 116 bits (291), Expect = 2e-26
Identities = 57/94 (60%), Positives = 70/94 (74%)
Frame = +1
Query: 1 KVADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVA 180
K ADNF YTDP+D S QG+R++F DGSR++ RLSGTGSSGAT+R+YIDSY K +
Sbjct: 469 KEADNFSYTDPVDKSVATKQGLRIVFEDGSRIVVRLSGTGSSGATVRLYIDSYEKENVLG 528
Query: 181 HISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 282
S V LKPL++I L I Q+ + TGRNAPTVIT
Sbjct: 529 QAS--VMLKPLIDIALEISQLPKFTGRNAPTVIT 560
>sp|Q7KHA1|PGM_DROSI Phosphoglucomutase (Glucose phosphomutase) (PGM)
Length = 560
Score = 116 bits (291), Expect = 2e-26
Identities = 57/94 (60%), Positives = 70/94 (74%)
Frame = +1
Query: 1 KVADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVA 180
K ADNF YTDP+D S QG+R++F DGSR++ RLSGTGSSGAT+R+YIDSY K +
Sbjct: 469 KEADNFSYTDPVDKSVATKQGLRIVFEDGSRIVVRLSGTGSSGATVRLYIDSYEKENVLG 528
Query: 181 HISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 282
S V LKPL++I L I Q+ + TGRNAPTVIT
Sbjct: 529 QAS--VMLKPLIDIALEISQLPKFTGRNAPTVIT 560
>sp|P00949|PGM1_RABIT Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 116 bits (290), Expect = 2e-26
Identities = 54/92 (58%), Positives = 73/92 (79%)
Frame = +1
Query: 7 ADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVAHI 186
ADNF+Y DP+D S +KNQG+R++F+DGSR+I+RLSGTGS+GATIR+YIDSY K+ +
Sbjct: 471 ADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQ 530
Query: 187 SSEVALKPLVEIGLSICQIKQITGRNAPTVIT 282
+V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 531 DPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|Q9SNX2|PGMC_BROIN Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM)
Length = 581
Score = 115 bits (288), Expect = 4e-26
Identities = 55/92 (59%), Positives = 72/92 (78%)
Frame = +1
Query: 7 ADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVAHI 186
AD F+YTDP+D S +K+QGIR LF DGSRL++RLSGTGS GATIRIYI+ Y K++
Sbjct: 490 ADEFEYTDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRIYIEQYEKDSSKTGR 549
Query: 187 SSEVALKPLVEIGLSICQIKQITGRNAPTVIT 282
S AL PLV++ L + +I+++TGR+APTVIT
Sbjct: 550 ESSDALSPLVDVALKLSKIQELTGRSAPTVIT 581
>sp|O49299|PGMC1_ARATH Probable phosphoglucomutase, cytoplasmic 1 (Glucose phosphomutase
1) (PGM 1)
Length = 582
Score = 113 bits (282), Expect = 2e-25
Identities = 53/92 (57%), Positives = 71/92 (77%)
Frame = +1
Query: 7 ADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVAHI 186
AD F+Y DP+D S +K+QGIR LF DGSRL++RLSGTGS GATIR+YI+ Y K+A
Sbjct: 491 ADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDASKTGR 550
Query: 187 SSEVALKPLVEIGLSICQIKQITGRNAPTVIT 282
S+ AL PLV++ L + ++++ TGR+APTVIT
Sbjct: 551 ESQEALSPLVDLALKLSKMEEFTGRSAPTVIT 582
>sp|Q9SM59|PGMP_PEA Phosphoglucomutase, chloroplast precursor (Glucose phosphomutase)
(PGM)
Length = 626
Score = 112 bits (279), Expect = 5e-25
Identities = 48/92 (52%), Positives = 70/92 (76%)
Frame = +1
Query: 7 ADNFQYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVAHI 186
AD+F YTDP+D S QG+R +F+DGSR+IYRLSGTGS+GAT+R+YI+ + + +
Sbjct: 535 ADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDV 594
Query: 187 SSEVALKPLVEIGLSICQIKQITGRNAPTVIT 282
+++ALKPL+++ LS+ ++K TGR PTVIT
Sbjct: 595 DAQIALKPLIDLALSVSKLKDFTGREKPTVIT 626
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,026,726
Number of Sequences: 369166
Number of extensions: 921621
Number of successful extensions: 2424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2418
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)