Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_K18
(471 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 86 6e-17
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 81 1e-15
sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precur... 75 1e-13
sp|Q8JGT9|CRVP_RHATT Tigrin precursor 72 6e-13
sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor ... 71 1e-12
sp|Q8JI39|CRVP_TRIFL Triflin precursor 70 2e-12
sp|Q7ZTA0|CRVP_AGKPI Piscivorin precursor 70 2e-12
sp|Q8JI40|CRVP_AGKHA Ablomin precursor 69 4e-12
sp|Q7ZT99|CRVP_CROAT Catrin-1/2 precursor 69 4e-12
sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 pre... 69 5e-12
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 85.5 bits (210), Expect = 6e-17
Identities = 40/74 (54%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +1
Query: 4 VCGHYTQVAWAKSYAVGCAAVNCKEKTG-GSFAYGWLFICNYGPAGNFNDEAPYEVGAAC 180
VCGHYTQV WA SY VGCA C + +G + + G FICNYGP GN+ PY+ GA C
Sbjct: 134 VCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY-PTWPYKRGATC 192
Query: 181 SKCPKGTSCKNNLC 222
S CP C +NLC
Sbjct: 193 SACPNNDKCLDNLC 206
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 81.3 bits (199), Expect = 1e-15
Identities = 39/73 (53%), Positives = 44/73 (60%)
Frame = +1
Query: 4 VCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDEAPYEVGAACS 183
VCGHYTQV WA SY +GCA C G FIC+YGPAGN+ PY+ GA CS
Sbjct: 132 VCGHYTQVVWADSYKLGCAVQLCPN--------GANFICDYGPAGNY-PTWPYKQGATCS 182
Query: 184 KCPKGTSCKNNLC 222
CPK C N+LC
Sbjct: 183 DCPKDDKCLNSLC 195
>sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precursor (Stecrisp)
Length = 233
Score = 74.7 bits (182), Expect = 1e-13
Identities = 36/76 (47%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGA 174
AV GHYTQ+ W KSY +GCAA C S Y + F+C Y PAGNF PY G
Sbjct: 123 AVTGHYTQIVWYKSYRIGCAAAYCP-----SSPYSYFFVCQYCPAGNFIGKTATPYTSGT 177
Query: 175 ACSKCPKGTSCKNNLC 222
C CP + C N LC
Sbjct: 178 PCGDCP--SDCDNGLC 191
>sp|Q8JGT9|CRVP_RHATT Tigrin precursor
Length = 237
Score = 72.0 bits (175), Expect = 6e-13
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGA 174
+V GHYTQ+ W KSY VGCAA C S Y + ++C Y PAGN + PY G
Sbjct: 129 SVTGHYTQIVWYKSYLVGCAAAYCP-----SSLYNYFYVCQYCPAGNIQGSTSTPYASGP 183
Query: 175 ACSKCPKGTSCKNNLC 222
C+ CP ++C N LC
Sbjct: 184 TCADCP--SNCDNGLC 197
>sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor (TJ-CRVP)
Length = 240
Score = 70.9 bits (172), Expect = 1e-12
Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGA 174
AV GHYTQ+ W KSY +GCAA C S Y + ++C Y PAGN PY G
Sbjct: 130 AVVGHYTQIVWYKSYRIGCAAAYCP-----SAEYSYFYVCQYCPAGNMIGKTATPYTSGP 184
Query: 175 ACSKCPKGTSCKNNLC 222
C CP + C N LC
Sbjct: 185 PCGDCP--SDCDNGLC 198
>sp|Q8JI39|CRVP_TRIFL Triflin precursor
Length = 240
Score = 70.5 bits (171), Expect = 2e-12
Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGA 174
AV GHYTQ+ W KSY GCAA C S Y + ++C Y PAGN PY+ G
Sbjct: 130 AVIGHYTQIVWYKSYRAGCAAAYCP-----SSKYSYFYVCQYCPAGNIIGKTATPYKSGP 184
Query: 175 ACSKCPKGTSCKNNLC 222
C CP + C N LC
Sbjct: 185 PCGDCP--SDCDNGLC 198
>sp|Q7ZTA0|CRVP_AGKPI Piscivorin precursor
Length = 240
Score = 70.1 bits (170), Expect = 2e-12
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGA 174
AV GH+TQ+ W KSY VGCAA C S Y + ++C Y PAGN + PY+ G
Sbjct: 130 AVIGHFTQIVWYKSYLVGCAAAYCP-----SSEYSYFYVCQYCPAGNIIGKIATPYKSGP 184
Query: 175 ACSKCPKGTSCKNNLC 222
C CP ++C N LC
Sbjct: 185 PCGDCP--SACVNGLC 198
>sp|Q8JI40|CRVP_AGKHA Ablomin precursor
Length = 240
Score = 69.3 bits (168), Expect = 4e-12
Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGA 174
AV GH+TQ+ W KSY GCAA C S Y + ++C Y PAGN + PY G
Sbjct: 130 AVSGHFTQIVWYKSYRAGCAAAYCP-----SSEYSYFYVCQYCPAGNMRGKTATPYTSGP 184
Query: 175 ACSKCPKGTSCKNNLC 222
C CP ++C N LC
Sbjct: 185 PCGDCP--SACDNGLC 198
>sp|Q7ZT99|CRVP_CROAT Catrin-1/2 precursor
Length = 240
Score = 69.3 bits (168), Expect = 4e-12
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGA 174
AV GH++QV W KSY +GCAA C S Y + ++C Y PAGN PY+ G
Sbjct: 130 AVTGHFSQVVWYKSYRIGCAAAYCP-----SSKYSYFYVCQYCPAGNIIGKTATPYKSGP 184
Query: 175 ACSKCPKGTSCKNNLC 222
C CP ++C N LC
Sbjct: 185 PCGDCP--SACDNGLC 198
>sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 precursor (CRISP-3)
Length = 245
Score = 68.9 bits (167), Expect = 5e-12
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGA 174
AV GHYTQV W SY VGC C ++ G+ Y ++C Y PAGN+ ++ PYE G
Sbjct: 134 AVVGHYTQVVWYSSYRVGCGIAYCPKQ--GTLKY--YYVCQYCPAGNYVNKINTPYEQGT 189
Query: 175 ACSKCPKGTSCKNNLC 222
C++CP +C N LC
Sbjct: 190 PCARCP--GNCDNGLC 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,705,188
Number of Sequences: 369166
Number of extensions: 935653
Number of successful extensions: 2783
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2690
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)