Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_K14
(648 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nu... 68 2e-11
sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 (Nuclear pore prot... 56 7e-08
sp|Q12220|DIP2_YEAST DOM34-interacting protein 2 (U3 small ... 41 0.003
sp|P54788|ORC1_KLULA Origin recognition complex subunit 1 34 0.29
sp|Q8K9B8|HOLA_BUCAP DNA polymerase III, delta subunit 34 0.29
sp|Q89B34|OXAA_BUCBP Membrane protein oxaA 34 0.29
sp|Q59026|Y1632_METJA Hypothetical protein MJ1632 32 1.4
sp|Q75G41|RMAR_ASHGO Mitochondrial ribosomal protein VAR1 30 4.1
sp|P57435|HOLB_BUCAI DNA polymerase III, delta' subunit 30 7.0
sp|P41653|YCF2_PINTH Protein ycf2 30 7.0
>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 precursor [Contains: Nuclear
pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa
nucleoporin); Nuclear pore complex protein Nup96
(Nucleoporin Nup96) (96 kDa nucleoporin)]
Length = 1729
Score = 67.8 bits (164), Expect = 2e-11
Identities = 34/119 (28%), Positives = 57/119 (47%)
Frame = +3
Query: 33 HRQINNSKNLSENEKFLVDKLNVPIEWIHEGKAIYCKTTGNIELEAYHWLKCGQYERSYQ 212
H Q+ + E FL KL VP +WIHE KA+ + LEA K + R ++
Sbjct: 1589 HCQLLETPESWAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHK 1648
Query: 213 LYINQIIPNLLINDKFEKIKEILSQFVNNKSDRVLANWSVDGEIYLKYIYIDTSLRTLK 389
L I + + +IN+ ++ +K L + ++ +W G +YL YI + LR ++
Sbjct: 1649 LIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQ 1707
>sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 (Nuclear pore protein nup189)
Length = 1778
Score = 56.2 bits (134), Expect = 7e-08
Identities = 32/119 (26%), Positives = 63/119 (52%)
Frame = +3
Query: 3 TRSHLLKSLVHRQINNSKNLSENEKFLVDKLNVPIEWIHEGKAIYCKTTGNIELEAYHWL 182
TR+ + S + R + E +++KL +P W++E KA+Y + G+ E Y
Sbjct: 1584 TRTSTITSCLARNLRGGLGAGAVE--MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQ 1641
Query: 183 KCGQYERSYQLYINQIIPNLLINDKFEKIKEILSQFVNNKSDRVLANWSVDGEIYLKYI 359
+ YE ++++ ++ + P +I+ ++K+ L F N ++D LA+W G+IY Y+
Sbjct: 1642 EAALYEDAHKVLLDTLAPQAVISGNKTQLKKALEGF-NGQTDG-LASWRFGGQIYSDYL 1698
>sp|Q12220|DIP2_YEAST DOM34-interacting protein 2 (U3 small nucleolar RNA-associated
protein 12) (U3 snoRNA-associated protein 12)
Length = 943
Score = 40.8 bits (94), Expect = 0.003
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Frame = +3
Query: 348 LKYI-YIDTSLRTLKLTNKLANHSYL-IDCEN-----EGGFEELVFHENEELNIQIQKLK 506
LK++ +IDT ++ NK HS+L + C+N + +ELV +NEEL +QI ++K
Sbjct: 830 LKFLKFIDTVMQ-----NKTLLHSHLPLICKNLFFIIKFNHKELVSQKNEELKLQINRVK 884
Query: 507 IEINKLSKATE---GFRVTNEAQRICKQQFVLLSN 602
E+ K+TE GF V + + KQQ+ L N
Sbjct: 885 TELRSALKSTEDDLGFNV--QGLKFVKQQWNLRHN 917
>sp|P54788|ORC1_KLULA Origin recognition complex subunit 1
Length = 886
Score = 34.3 bits (77), Expect = 0.29
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Frame = +3
Query: 114 IHEGKAIYCKTTGNIELEAYHWLKCGQYERSY-QLYINQIIPNLLINDKFEKIKEILSQF 290
++ G I CK G EL AY + +Y +L+ + IN E+ K++ +F
Sbjct: 52 LYPGVTIVCKVEGADELSAYMIHEVRLNTSNYVELWCLNYLSWYEINAA-ERYKQLDGEF 110
Query: 291 VNNKSDR-------VLANWSVDGEIYLKYIYIDTSLRTLKLTNKLANHSYLIDCENEGGF 449
++ A+ S+ E+YL + LR L+ + N +D NEG
Sbjct: 111 YETNKEKGDKFFEETFASQSIKNELYLTAELSEIYLRDLQFVANIKNEKEYLDSVNEGKM 170
Query: 450 EELVF 464
+ +F
Sbjct: 171 DSNMF 175
>sp|Q8K9B8|HOLA_BUCAP DNA polymerase III, delta subunit
Length = 338
Score = 34.3 bits (77), Expect = 0.29
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +3
Query: 96 NVPIEWIHEGKAIYCKTTGNIELEAYHWLKCGQYERSYQLYINQIIPNLLI-----NDKF 260
+ P EW + Y T N+++ +L +Y L +NQI+ L I N K
Sbjct: 140 STPYEWAFKKWLQYEIKTRNLKITQESFLLLHKYYEGNTLCLNQILDILSITWPNENIKI 199
Query: 261 EKIKEILSQF 290
EKIK+I++QF
Sbjct: 200 EKIKKIINQF 209
>sp|Q89B34|OXAA_BUCBP Membrane protein oxaA
Length = 536
Score = 34.3 bits (77), Expect = 0.29
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Frame = +3
Query: 90 KLNVPIEWIHEGKAIYCKTTGNIELEAYHWLKCGQYERSYQLYINQIIPNLLINDKFEKI 269
K+ VP++WI + IY K LK G+Y+ S + IN I L F ++
Sbjct: 141 KIEVPLQWISKDGIIYKK---------IFVLKSGEYDVSVKYKINNITNKHLKVSMFGQL 191
Query: 270 KEIL------SQFVNNKSDRVL--ANWSVDGEIYLKYIYIDTSLRTLKLTNKLANHS 416
K+ + + + NN + + A +S D + Y+KY + S+ + N + HS
Sbjct: 192 KQTINLPEDKNTYTNNFALQTFRGAAYSSDNDKYVKYSF--DSIVNKEKKNIVVTHS 246
>sp|Q59026|Y1632_METJA Hypothetical protein MJ1632
Length = 255
Score = 32.0 bits (71), Expect = 1.4
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Frame = +3
Query: 72 EKFLVDKLNVPIEWIHEGKAIYCKTTGNIE-LEAYHWLKCGQYERSYQLYINQI-IPNLL 245
+K VD++++ ++ E K IY + N + L+ ++ + E ++++ I+ + IPN++
Sbjct: 124 DKLEVDEIHIDLKAYDENKHIYLTSCSNKKVLDCISYIGKYRDEFNFKVEIDTVLIPNIV 183
Query: 246 INDKFEKIKEILSQFVNNKSDRVLANWSVDGEI--YLKY 356
D+ EKI + LS NW + I Y+KY
Sbjct: 184 DLDEIEKIAKFLS------------NWDLPYRITGYVKY 210
>sp|Q75G41|RMAR_ASHGO Mitochondrial ribosomal protein VAR1
Length = 339
Score = 30.4 bits (67), Expect = 4.1
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 204 SYQLYINQIIPNLLINDKFEKIKEILSQFVNNKSDRVLANWSVDGEIYLKYIYIDTSLRT 383
+Y + IN + NLL ND + +++++ N K V N L Y+Y+DT L +
Sbjct: 131 NYMMSINNQMINLLNNDN-NSLNNLMTKYYNKK---VYIN-----TYKLNYMYLDTELLS 181
Query: 384 LKLTNKLANH 413
LTN N+
Sbjct: 182 QTLTNIYNNN 191
>sp|P57435|HOLB_BUCAI DNA polymerase III, delta' subunit
Length = 326
Score = 29.6 bits (65), Expect = 7.0
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 547 GLPTKLKEFVNNNLYCCQIDFY*CVNE 627
G P K+F+N+NL+ +I+FY C+++
Sbjct: 195 GSPLYAKKFINSNLWIDRINFYECLHD 221
>sp|P41653|YCF2_PINTH Protein ycf2
Length = 2054
Score = 29.6 bits (65), Expect = 7.0
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 85 SISLMYLLNGFMREKRFIAKLQEIS 159
S +L+ LN F+REKR+++ ++EIS
Sbjct: 875 SFNLLTRLNPFVREKRYLSSIEEIS 899
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,359,725
Number of Sequences: 369166
Number of extensions: 1069646
Number of successful extensions: 3081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3074
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)