Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_K09
(819 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5GAA8|MATK_CRAPL Maturase K (Intron maturase) 34 0.55
sp|O67415|YE21_AQUAE Hypothetical UPF0033 protein AQ_1421 32 2.7
sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2... 30 6.1
>sp|Q5GAA8|MATK_CRAPL Maturase K (Intron maturase)
Length = 507
Score = 33.9 bits (76), Expect = 0.55
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = +3
Query: 387 YF*KNVNKLYLLIFLLRKFGTKTFTDFNWKFGIG*KN-KLYLLIFN*ENIVWKIWF-YLK 560
Y+ K+ + L+LL FLL + T KN +L+L ++N ++ +F +++
Sbjct: 165 YWLKDASSLHLLRFLLNDYWNSLITPKKASSSFSKKNQRLFLFLYNSHVCEYEYFFVFIR 224
Query: 561 KHLYIFKQTLFIDFQLRKYCMENLVLFEKHLYIFMRILCVQNFLW 695
K T + F R YC E + E+ +F+++ +Q LW
Sbjct: 225 KQSSHLLSTSYGVFLERIYCYEKV---ERLXNVFIKVKDLQANLW 266
>sp|O67415|YE21_AQUAE Hypothetical UPF0033 protein AQ_1421
Length = 197
Score = 31.6 bits (70), Expect = 2.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 476 IWYWIKKQTLFIDFQLRKYCMENLVLFEKTSVHF*T 583
+WYWIK +L + +R++C++ + F K HF T
Sbjct: 86 LWYWIKFHSLGVKLHIRQFCIQ-INPFVKKPTHFIT 120
>sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 300
Score = 30.4 bits (67), Expect = 6.1
Identities = 26/112 (23%), Positives = 49/112 (43%)
Frame = +3
Query: 357 FKHLIQIIYFYF*KNVNKLYLLIFLLRKFGTKTFTDFNWKFGIG*KNKLYLLIFN*ENIV 536
F ++ +IY +F + L+ FL+ F K F NW+ LL+F N+
Sbjct: 165 FLSVVNVIYLFF----YYVVLMAFLMPNFNVKDFNFVNWE---------VLLVF--LNVP 209
Query: 537 WKIWFYLKKHLYIFKQTLFIDFQLRKYCMENLVLFEKHLYIFMRILCVQNFL 692
+ + F++K +++ + +D L L L +F+ +LC +L
Sbjct: 210 FSVSFFIK--IFVLSEVFKLD---------GLFLLFLLLMMFLSMLCFSLWL 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,168,554
Number of Sequences: 369166
Number of extensions: 1486627
Number of successful extensions: 2460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2456
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)