Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_J10
(426 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 259 1e-69
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 259 2e-69
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 259 2e-69
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 259 2e-69
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 258 3e-69
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 257 8e-69
sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha) 256 1e-68
sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)... 256 1e-68
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 256 2e-68
sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha) 254 7e-68
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 259 bits (663), Expect = 1e-69
Identities = 118/141 (83%), Positives = 134/141 (95%)
Frame = +2
Query: 2 FETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALL 181
FET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALL
Sbjct: 80 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL 139
Query: 182 AYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGD 361
AYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGD
Sbjct: 140 AYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGD 199
Query: 362 NMIEESTNMPWYKGWEITRKN 424
NM+E S+NMPW+KGW++TRK+
Sbjct: 200 NMLEPSSNMPWFKGWKVTRKD 220
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 259 bits (662), Expect = 2e-69
Identities = 118/141 (83%), Positives = 133/141 (94%)
Frame = +2
Query: 2 FETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALL 181
FET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALL
Sbjct: 80 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL 139
Query: 182 AYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGD 361
AYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGD
Sbjct: 140 AYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGD 199
Query: 362 NMIEESTNMPWYKGWEITRKN 424
NM+E S NMPW+KGW++TRK+
Sbjct: 200 NMLEPSANMPWFKGWKVTRKD 220
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 259 bits (662), Expect = 2e-69
Identities = 118/141 (83%), Positives = 133/141 (94%)
Frame = +2
Query: 2 FETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALL 181
FET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALL
Sbjct: 80 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL 139
Query: 182 AYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGD 361
AYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGD
Sbjct: 140 AYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGD 199
Query: 362 NMIEESTNMPWYKGWEITRKN 424
NM+E S NMPW+KGW++TRK+
Sbjct: 200 NMLEPSANMPWFKGWKVTRKD 220
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 259 bits (662), Expect = 2e-69
Identities = 118/141 (83%), Positives = 133/141 (94%)
Frame = +2
Query: 2 FETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALL 181
FET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALL
Sbjct: 80 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL 139
Query: 182 AYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGD 361
AYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGD
Sbjct: 140 AYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGD 199
Query: 362 NMIEESTNMPWYKGWEITRKN 424
NM+E S NMPW+KGW++TRK+
Sbjct: 200 NMLEPSANMPWFKGWKVTRKD 220
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 258 bits (660), Expect = 3e-69
Identities = 118/140 (84%), Positives = 132/140 (94%)
Frame = +2
Query: 2 FETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALL 181
FET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALL
Sbjct: 80 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL 139
Query: 182 AYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGD 361
AYTLGVKQ+IVG+NKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGD
Sbjct: 140 AYTLGVKQLIVGINKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGD 199
Query: 362 NMIEESTNMPWYKGWEITRK 421
NM+E S NMPW+KGW+ITRK
Sbjct: 200 NMLEPSPNMPWFKGWKITRK 219
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 257 bits (656), Expect = 8e-69
Identities = 118/140 (84%), Positives = 133/140 (95%)
Frame = +2
Query: 2 FETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALL 181
FET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALL
Sbjct: 80 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 139
Query: 182 AYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGD 361
A+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV SY+KK+GY P AVAFVPISGW+GD
Sbjct: 140 AFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGD 199
Query: 362 NMIEESTNMPWYKGWEITRK 421
NM+E ST MPW+KGW++ RK
Sbjct: 200 NMLEPSTKMPWFKGWQVERK 219
>sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 256 bits (654), Expect = 1e-68
Identities = 118/140 (84%), Positives = 131/140 (93%)
Frame = +2
Query: 2 FETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALL 181
FET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALL
Sbjct: 66 FETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 125
Query: 182 AYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGD 361
A+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV SY+KK+GY P AVAFVPISGW+GD
Sbjct: 126 AFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGD 185
Query: 362 NMIEESTNMPWYKGWEITRK 421
NM+E ST MPW+KGW + RK
Sbjct: 186 NMLEASTKMPWFKGWNVERK 205
>sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)
sp|P84315|EF1A_HELVI Elongation factor 1-alpha (EF-1-alpha)
sp|P84318|EF1A_HELGL Elongation factor 1-alpha (EF-1-alpha)
sp|P84320|EF1A_HELDI Elongation factor 1-alpha (EF-1-alpha)
sp|P84317|EF1A_HELAM Elongation factor 1-alpha (EF-1-alpha)
sp|P84319|EF1A_HELAL Elongation factor 1-alpha (EF-1-alpha)
sp|P84322|EF1A_ANIIF Elongation factor 1-alpha (EF-1-alpha)
sp|P84321|EF1A_ADIBE Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 256 bits (654), Expect = 1e-68
Identities = 118/140 (84%), Positives = 131/140 (93%)
Frame = +2
Query: 2 FETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALL 181
FET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALL
Sbjct: 66 FETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 125
Query: 182 AYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGD 361
A+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV SY+KK+GY P AVAFVPISGW+GD
Sbjct: 126 AFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGD 185
Query: 362 NMIEESTNMPWYKGWEITRK 421
NM+E ST MPW+KGW + RK
Sbjct: 186 NMLEASTKMPWFKGWNVERK 205
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 256 bits (653), Expect = 2e-68
Identities = 117/140 (83%), Positives = 133/140 (95%)
Frame = +2
Query: 2 FETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALL 181
FET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALL
Sbjct: 80 FETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 139
Query: 182 AYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGD 361
A+TLGVKQ+IVGVNKMDS+EPP+S+ R+EEIKKEV SY+KK+GY P AVAFVPISGW+GD
Sbjct: 140 AFTLGVKQLIVGVNKMDSSEPPYSEARYEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGD 199
Query: 362 NMIEESTNMPWYKGWEITRK 421
NM+E STNMPW+KGW++ RK
Sbjct: 200 NMLEPSTNMPWFKGWKVERK 219
>sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 254 bits (648), Expect = 7e-68
Identities = 118/140 (84%), Positives = 129/140 (92%)
Frame = +2
Query: 2 FETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALL 181
FET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALL
Sbjct: 80 FETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL 139
Query: 182 AYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGD 361
AYTLGVKQ+IVGVNKMDSTEPPFS+ RFEEIKKEV +Y+KK+GY P AVAFVPISGW+GD
Sbjct: 140 AYTLGVKQLIVGVNKMDSTEPPFSEARFEEIKKEVSAYIKKIGYNPAAVAFVPISGWHGD 199
Query: 362 NMIEESTNMPWYKGWEITRK 421
NM+E S +PWYKGW I RK
Sbjct: 200 NMLEASDRLPWYKGWNIERK 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,176,681
Number of Sequences: 369166
Number of extensions: 851815
Number of successful extensions: 4047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3692
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)