Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_J03
(761 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATP... 394 e-109
sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATP... 394 e-109
sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATP... 394 e-109
sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidn... 375 e-104
sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidn... 372 e-103
sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATP... 369 e-102
sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain ... 368 e-102
sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit... 368 e-102
sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brai... 368 e-102
sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brai... 367 e-101
>sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 394 bits (1013), Expect = e-109
Identities = 195/216 (90%), Positives = 208/216 (96%)
Frame = +3
Query: 12 VRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLDIQGQAINPSSRIYPEEMIQTGISSID 191
+RTPVSEDMLGR+FNGSGKP D GP I+AEDFLDIQGQ INP SRIYPEEMIQTGIS+ID
Sbjct: 102 LRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAID 161
Query: 192 VMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVN 371
VMNSIARGQKIPIFSA+GLPHNEIAAQICRQAGLV++P KSVLDDH+DNFAIVFAAMGVN
Sbjct: 162 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKIPGKSVLDDHEDNFAIVFAAMGVN 221
Query: 372 METARFFMQDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVLVIL 551
METARFF QDF+E+GSMENVCLFLNLANDPTIERIITPR+ALT AE+LAYQCEKHVLVIL
Sbjct: 222 METARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKHVLVIL 281
Query: 552 TDMTSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 659
TDM+SYAEALREVSAAREEVPGRRGFPGYMYTDLAT
Sbjct: 282 TDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 317
Score = 74.3 bits (181), Expect = 3e-13
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +2
Query: 659 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 760
IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD
Sbjct: 318 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 351
>sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 394 bits (1013), Expect = e-109
Identities = 195/216 (90%), Positives = 208/216 (96%)
Frame = +3
Query: 12 VRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLDIQGQAINPSSRIYPEEMIQTGISSID 191
+RTPVSEDMLGR+FNGSGKP D GP I+AEDFLDIQGQ INP SRIYPEEMIQTGIS+ID
Sbjct: 102 LRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAID 161
Query: 192 VMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVN 371
VMNSIARGQKIPIFSA+GLPHNEIAAQICRQAGLV++P KSVLDDH+DNFAIVFAAMGVN
Sbjct: 162 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKIPGKSVLDDHEDNFAIVFAAMGVN 221
Query: 372 METARFFMQDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVLVIL 551
METARFF QDF+E+GSMENVCLFLNLANDPTIERIITPR+ALT AE+LAYQCEKHVLVIL
Sbjct: 222 METARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKHVLVIL 281
Query: 552 TDMTSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 659
TDM+SYAEALREVSAAREEVPGRRGFPGYMYTDLAT
Sbjct: 282 TDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 317
Score = 74.3 bits (181), Expect = 3e-13
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +2
Query: 659 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 760
IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD
Sbjct: 318 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 351
>sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
Length = 490
Score = 394 bits (1012), Expect = e-109
Identities = 196/216 (90%), Positives = 207/216 (95%)
Frame = +3
Query: 12 VRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLDIQGQAINPSSRIYPEEMIQTGISSID 191
+RTPVSEDMLGR+FNGSGKP D GP I+AEDFLDIQGQ INP SRIYPEEMIQTGIS+ID
Sbjct: 98 LRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAID 157
Query: 192 VMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVN 371
VMNSIARGQKIPIFSA+GLPHNEIAAQICRQAGLV+LP KSVLDDH DNFAIVFAAMGVN
Sbjct: 158 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPGKSVLDDHTDNFAIVFAAMGVN 217
Query: 372 METARFFMQDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVLVIL 551
METARFF QDF+E+GSMENVCLFLNLANDPTIERIITPR+ALT AE+LAYQCEKHVLVIL
Sbjct: 218 METARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKHVLVIL 277
Query: 552 TDMTSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 659
TDM+SYAEALREVSAAREEVPGRRGFPGYMYTDLAT
Sbjct: 278 TDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 313
Score = 74.3 bits (181), Expect = 3e-13
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +2
Query: 659 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 760
IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD
Sbjct: 314 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 347
>sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 375 bits (962), Expect = e-104
Identities = 188/216 (87%), Positives = 201/216 (93%)
Frame = +3
Query: 12 VRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLDIQGQAINPSSRIYPEEMIQTGISSID 191
+RTPVSEDMLGR+FNGSGKP D GP +MAEDFLDI GQ INP SRIYPEEMIQTGIS ID
Sbjct: 113 LRTPVSEDMLGRVFNGSGKPIDKGPVVMAEDFLDINGQPINPHSRIYPEEMIQTGISPID 172
Query: 192 VMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVN 371
VMNSIARGQKIPIFSA+GLPHNEIAAQICRQAGLV+ K+VLD H DNFAIVFAAMGVN
Sbjct: 173 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK-KSKAVLDYHDDNFAIVFAAMGVN 231
Query: 372 METARFFMQDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVLVIL 551
METARFF DF+++G+M NVCLFLNLANDPTIERIITPR+ALTTAE+LAYQCEKHVLVIL
Sbjct: 232 METARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVIL 291
Query: 552 TDMTSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 659
TDM+SYAEALREVSAAREEVPGRRGFPGYMYTDLAT
Sbjct: 292 TDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 327
Score = 72.0 bits (175), Expect = 2e-12
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +2
Query: 659 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 760
IYERAGRVEGR GSITQIPILTMPNDDITHPIPD
Sbjct: 328 IYERAGRVEGRGGSITQIPILTMPNDDITHPIPD 361
>sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 372 bits (955), Expect = e-103
Identities = 186/216 (86%), Positives = 200/216 (92%)
Frame = +3
Query: 12 VRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLDIQGQAINPSSRIYPEEMIQTGISSID 191
+RTPVSEDMLGR+FNGSGKP D GP +MAEDFLDI GQ INP RIYPEEMI+TGIS ID
Sbjct: 113 LRTPVSEDMLGRVFNGSGKPIDKGPVVMAEDFLDINGQPINPHDRIYPEEMIETGISPID 172
Query: 192 VMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVN 371
VMNSIARGQKIPIFSA+GLPHNEIAAQICRQAGLV+ K+VLD H DNFAIVFAAMGVN
Sbjct: 173 VMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK-KSKAVLDYHDDNFAIVFAAMGVN 231
Query: 372 METARFFMQDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVLVIL 551
METARFF DF+++G+M NVCLFLNLANDPTIERIITPR+ALTTAE+LAYQCEKHVLVIL
Sbjct: 232 METARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVIL 291
Query: 552 TDMTSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 659
TDM+SYAEALREVSAAREEVPGRRGFPGYMYTDLAT
Sbjct: 292 TDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 327
Score = 72.0 bits (175), Expect = 2e-12
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +2
Query: 659 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 760
IYERAGRVEGR GSITQIPILTMPNDDITHPIPD
Sbjct: 328 IYERAGRVEGRGGSITQIPILTMPNDDITHPIPD 361
>sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 453
Score = 369 bits (947), Expect = e-102
Identities = 184/216 (85%), Positives = 200/216 (92%)
Frame = +3
Query: 12 VRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLDIQGQAINPSSRIYPEEMIQTGISSID 191
+RTPVSEDMLGR+FNGSGKP D GP ++AEDFLDI GQ INP RIYPEEMIQTGIS+ID
Sbjct: 60 LRTPVSEDMLGRVFNGSGKPIDRGPAVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAID 119
Query: 192 VMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVN 371
MNSIARGQKIPIFSA+GLPHNEIAAQICRQAGLV+ K V+D ++NFAIVFAAMGVN
Sbjct: 120 GMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK-KSKDVMDYSEENFAIVFAAMGVN 178
Query: 372 METARFFMQDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVLVIL 551
METARFF DF+E+GSM+NVCLFLNLANDPTIERIITPR+ALTTAE+LAYQCEKHVLVIL
Sbjct: 179 METARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVIL 238
Query: 552 TDMTSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 659
TDM+SYAEALREVSAAREEVPGRRGFPGYMYTDLAT
Sbjct: 239 TDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 274
Score = 74.3 bits (181), Expect = 3e-13
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +2
Query: 659 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 760
IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD
Sbjct: 275 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 308
>sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
sp|P62814|VATB2_MOUSE Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 368 bits (945), Expect = e-102
Identities = 184/216 (85%), Positives = 200/216 (92%)
Frame = +3
Query: 12 VRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLDIQGQAINPSSRIYPEEMIQTGISSID 191
+RTPVSEDMLGR+FNGSGKP D GP ++AEDFLDI GQ INP RIYPEEMIQTGIS+ID
Sbjct: 119 LRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAID 178
Query: 192 VMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVN 371
MNSIARGQKIPIFSA+GLPHNEIAAQICRQAGLV+ K V+D ++NFAIVFAAMGVN
Sbjct: 179 GMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK-KSKDVVDYSEENFAIVFAAMGVN 237
Query: 372 METARFFMQDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVLVIL 551
METARFF DF+E+GSM+NVCLFLNLANDPTIERIITPR+ALTTAE+LAYQCEKHVLVIL
Sbjct: 238 METARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVIL 297
Query: 552 TDMTSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 659
TDM+SYAEALREVSAAREEVPGRRGFPGYMYTDLAT
Sbjct: 298 TDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 333
Score = 74.3 bits (181), Expect = 3e-13
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +2
Query: 659 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 760
IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD
Sbjct: 334 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 367
>sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit B (V-ATPase B subunit)
(Vacuolar proton pump B subunit)
Length = 491
Score = 368 bits (945), Expect = e-102
Identities = 186/216 (86%), Positives = 200/216 (92%)
Frame = +3
Query: 12 VRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLDIQGQAINPSSRIYPEEMIQTGISSID 191
+RTPVSEDMLGRIFNGSGKP D GP ++AEDFLDI GQ INP SRIYPEEMIQTGIS+ID
Sbjct: 101 LRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAID 160
Query: 192 VMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVN 371
VMNSIARGQKIPIFSASGLPHNEIAAQI RQ GLV+LP++ Q NFAIVFAAMGVN
Sbjct: 161 VMNSIARGQKIPIFSASGLPHNEIAAQIVRQGGLVQLPDRP---HEQTNFAIVFAAMGVN 217
Query: 372 METARFFMQDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVLVIL 551
METARFF QDF+E+GSMENVCLFLNLANDPTIERIITPRIALT+AE+LAYQC+KHVLV+L
Sbjct: 218 METARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRIALTSAEFLAYQCKKHVLVVL 277
Query: 552 TDMTSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 659
TDM+SYAEALREVSAAREEVPGRRGFPGYMYTDLAT
Sbjct: 278 TDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 313
Score = 72.4 bits (176), Expect = 1e-12
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 659 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 760
IYERAGRVEGR+GSITQIPILTMPNDDITHPIPD
Sbjct: 314 IYERAGRVEGRDGSITQIPILTMPNDDITHPIPD 347
>sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit) (HO57)
Length = 511
Score = 368 bits (945), Expect = e-102
Identities = 184/216 (85%), Positives = 200/216 (92%)
Frame = +3
Query: 12 VRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLDIQGQAINPSSRIYPEEMIQTGISSID 191
+RTPVSEDMLGR+FNGSGKP D GP ++AEDFLDI GQ INP RIYPEEMIQTGIS+ID
Sbjct: 119 LRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAID 178
Query: 192 VMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVN 371
MNSIARGQKIPIFSA+GLPHNEIAAQICRQAGLV+ K V+D ++NFAIVFAAMGVN
Sbjct: 179 GMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK-KSKDVVDYSEENFAIVFAAMGVN 237
Query: 372 METARFFMQDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVLVIL 551
METARFF DF+E+GSM+NVCLFLNLANDPTIERIITPR+ALTTAE+LAYQCEKHVLVIL
Sbjct: 238 METARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVIL 297
Query: 552 TDMTSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 659
TDM+SYAEALREVSAAREEVPGRRGFPGYMYTDLAT
Sbjct: 298 TDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 333
Score = 74.3 bits (181), Expect = 3e-13
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +2
Query: 659 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 760
IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD
Sbjct: 334 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 367
>sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 367 bits (942), Expect = e-101
Identities = 183/216 (84%), Positives = 200/216 (92%)
Frame = +3
Query: 12 VRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLDIQGQAINPSSRIYPEEMIQTGISSID 191
+RTPVSEDMLGR+FNGSGKP D GP ++AEDFLDI GQ INP RIYPEEMIQTGIS+ID
Sbjct: 119 LRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAID 178
Query: 192 VMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVN 371
MNSIARGQKIPIFSA+GLPHNEIAAQICRQAGLV+ K V+D ++NFAIVFAAMGVN
Sbjct: 179 GMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK-KSKDVVDYSEENFAIVFAAMGVN 237
Query: 372 METARFFMQDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVLVIL 551
METARFF DF+++GSM+NVCLFLNLANDPTIERIITPR+ALTTAE+LAYQCEKHVLVIL
Sbjct: 238 METARFFKSDFEQNGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVIL 297
Query: 552 TDMTSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 659
TDM+SYAEALREVSAAREEVPGRRGFPGYMYTDLAT
Sbjct: 298 TDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 333
Score = 74.3 bits (181), Expect = 3e-13
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +2
Query: 659 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 760
IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD
Sbjct: 334 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPD 367
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,946,617
Number of Sequences: 369166
Number of extensions: 1409675
Number of successful extensions: 4926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4547
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)