Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_J02
(262 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23528|COF1_HUMAN Cofilin-1 (Cofilin, non-muscle isoform... 41 0.001
sp|P45592|COF1_RAT Cofilin-1 (Cofilin, non-muscle isoform) 41 0.001
sp|P60982|DEST_PIG Destrin (Actin-depolymerizing factor) (A... 40 0.001
sp|P18760|COF1_MOUSE Cofilin-1 (Cofilin, non-muscle isoform) 40 0.001
sp|P18359|DEST_CHICK Destrin (Actin-depolymerizing factor) ... 40 0.001
sp|P37167|ACTP_ACACA Actophorin 40 0.001
sp|Q9R0P5|DEST_MOUSE Destrin (Actin-depolymerizing factor) ... 40 0.001
sp|Q9Y281|COF2_HUMAN Cofilin-2 (Cofilin, muscle isoform) 40 0.002
sp|P45591|COF2_MOUSE Cofilin-2 (Cofilin, muscle isoform) 40 0.002
sp|P10668|COF1_PIG Cofilin-1 (Cofilin, non-muscle isoform) ... 40 0.002
>sp|P23528|COF1_HUMAN Cofilin-1 (Cofilin, non-muscle isoform) (18 kDa phosphoprotein)
(p18)
Length = 166
Score = 40.8 bits (94), Expect = 0.001
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 1 WIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEK 144
W PE+ + S+MI A+SK I ++ G+K +++AN +E+ D + EK
Sbjct: 104 WAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|P45592|COF1_RAT Cofilin-1 (Cofilin, non-muscle isoform)
Length = 166
Score = 40.8 bits (94), Expect = 0.001
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 1 WIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEK 144
W PE+ + S+MI A+SK I ++ G+K +++AN +E+ D + EK
Sbjct: 104 WAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|P60982|DEST_PIG Destrin (Actin-depolymerizing factor) (ADF)
sp|P60981|DEST_HUMAN Destrin (Actin-depolymerizing factor) (ADF)
Length = 165
Score = 40.4 bits (93), Expect = 0.001
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 1 WIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEIDESVIKEK 144
W PE + S+MI A+SK I + G+K + +AN ++++ + I EK
Sbjct: 104 WAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151
>sp|P18760|COF1_MOUSE Cofilin-1 (Cofilin, non-muscle isoform)
Length = 166
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 1 WIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEK 144
W PE + S+MI A+SK I ++ G+K +++AN +E+ D + EK
Sbjct: 104 WAPENAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|P18359|DEST_CHICK Destrin (Actin-depolymerizing factor) (ADF)
Length = 165
Score = 40.4 bits (93), Expect = 0.001
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 1 WIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEIDESVIKEK 144
W PE + S+MI A+SK I + G+K + +AN ++++ + I EK
Sbjct: 104 WAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151
>sp|P37167|ACTP_ACACA Actophorin
Length = 138
Score = 40.4 bits (93), Expect = 0.001
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +1
Query: 1 WIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEIDESVIKEKTASKV 159
W P++ I S+M+ ++K I ++VG++ +++A EI E + E+ V
Sbjct: 85 WAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAKKDV 137
>sp|Q9R0P5|DEST_MOUSE Destrin (Actin-depolymerizing factor) (ADF) (Sid 23)
Length = 165
Score = 40.4 bits (93), Expect = 0.001
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 1 WIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEIDESVIKEK 144
W PE + S+MI A+SK I + G+K + +AN ++++ + I EK
Sbjct: 104 WAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLNRTCIAEK 151
>sp|Q9Y281|COF2_HUMAN Cofilin-2 (Cofilin, muscle isoform)
Length = 166
Score = 40.0 bits (92), Expect = 0.002
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 WIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEKTASKV 159
W PE+ + S+MI A+SK I + G+K + + N D+I D S + EK V
Sbjct: 104 WAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNV 157
>sp|P45591|COF2_MOUSE Cofilin-2 (Cofilin, muscle isoform)
Length = 166
Score = 40.0 bits (92), Expect = 0.002
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 WIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEKTASKV 159
W PE+ + S+MI A+SK I + G+K + + N D+I D S + EK V
Sbjct: 104 WAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGSV 157
>sp|P10668|COF1_PIG Cofilin-1 (Cofilin, non-muscle isoform)
sp|Q6B7M7|COF1_SHEEP Cofilin-1 (Cofilin, non-muscle isoform)
Length = 166
Score = 40.0 bits (92), Expect = 0.002
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 1 WIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEK 144
W PE + S+MI A+SK I ++ G+K +++AN +E+ D + EK
Sbjct: 104 WAPECAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,482,520
Number of Sequences: 369166
Number of extensions: 261504
Number of successful extensions: 639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)