Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_J01
(938 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9P215|POGK_HUMAN Pogo transposable element with KRAB do... 72 2e-12
sp|Q80TC5|POGK_MOUSE Pogo transposable element with KRAB do... 70 9e-12
sp|Q8BZH4|POGZ_MOUSE Pogo transposable element with ZNF domain 49 2e-05
sp|Q7Z3K3|POGZ_HUMAN Pogo transposable element with ZNF dom... 49 2e-05
sp|Q60976|JERKY_MOUSE Jerky protein 47 8e-05
sp|O75564|JERKY_HUMAN Jerky protein homolog 46 1e-04
sp|O60035|PDC2_CANAL PDC2 protein 33 1.2
sp|P33744|ADHE_CLOAB Aldehyde-alcohol dehydrogenase [Includ... 32 2.0
sp|Q9SEV0|BAN_ARATH Leucoanthocyanidin reductase (LAR) (BAN... 31 5.8
sp|Q5ZVM2|SERC_LEGPH Phosphoserine aminotransferase (PSAT) 31 5.8
>sp|Q9P215|POGK_HUMAN Pogo transposable element with KRAB domain (LST003/SLTP003)
Length = 609
Score = 72.0 bits (175), Expect = 2e-12
Identities = 35/111 (31%), Positives = 58/111 (52%)
Frame = -2
Query: 760 GFFKSKKALLVMDSTRAHITDISKNRIINSNTIPAIIPGGMTKILQPLDISINRSFKSYI 581
G ++ +L+++ R H TD KN + + NT IIPGG+T LQ LD+ + + +
Sbjct: 459 GAVPKQRGMLILNGFRGHATDSVKNSMESMNTDMVIIPGGLTSQLQVLDVVVYKPLNDSV 518
Query: 580 RDLREQWMINGDHSFTKTDRMRRASYLEVVNWVDRAWKSVPSNIIISGFKK 428
R W++ G+ + + T ++ + WV AW S+ S I+ GFKK
Sbjct: 519 RAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWVMVAWNSISSESIVQGFKK 569
>sp|Q80TC5|POGK_MOUSE Pogo transposable element with KRAB domain
Length = 607
Score = 70.1 bits (170), Expect = 9e-12
Identities = 33/111 (29%), Positives = 58/111 (52%)
Frame = -2
Query: 760 GFFKSKKALLVMDSTRAHITDISKNRIINSNTIPAIIPGGMTKILQPLDISINRSFKSYI 581
G ++ +L+++ R H TD K+ + N NT IIPGG+T LQ LD+ + + +
Sbjct: 459 GAVPRQRGMLILNGFRCHATDSVKSSMENMNTDMVIIPGGLTSQLQVLDVVVYKPLNDSV 518
Query: 580 RDLREQWMINGDHSFTKTDRMRRASYLEVVNWVDRAWKSVPSNIIISGFKK 428
R W++ G+ + + T ++ + W+ AW S+ S I+ GF+K
Sbjct: 519 RAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWIMVAWNSISSESIVQGFRK 569
>sp|Q8BZH4|POGZ_MOUSE Pogo transposable element with ZNF domain
Length = 1409
Score = 48.9 bits (115), Expect = 2e-05
Identities = 22/61 (36%), Positives = 40/61 (65%)
Frame = -2
Query: 742 KALLVMDSTRAHITDISKNRIINSNTIPAIIPGGMTKILQPLDISINRSFKSYIRDLREQ 563
K++LVMD R H+++ + S+T+PA++P G + +QPLD+ I R+ K++ L ++
Sbjct: 1219 KSMLVMDCHRTHLSEEVLALLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNF---LHKK 1275
Query: 562 W 560
W
Sbjct: 1276 W 1276
>sp|Q7Z3K3|POGZ_HUMAN Pogo transposable element with ZNF domain (Nbla00003)
Length = 1410
Score = 48.9 bits (115), Expect = 2e-05
Identities = 22/61 (36%), Positives = 39/61 (63%)
Frame = -2
Query: 742 KALLVMDSTRAHITDISKNRIINSNTIPAIIPGGMTKILQPLDISINRSFKSYIRDLREQ 563
K +LVMD R H+++ + S+T+PA++P G + +QPLD+ I R+ K++ L ++
Sbjct: 1223 KGMLVMDCHRTHLSEEVLAMLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNF---LHKK 1279
Query: 562 W 560
W
Sbjct: 1280 W 1280
>sp|Q60976|JERKY_MOUSE Jerky protein
Length = 557
Score = 47.0 bits (110), Expect = 8e-05
Identities = 33/128 (25%), Positives = 60/128 (46%)
Frame = -2
Query: 811 YFKYILNGSNKEEMLQRGFFKSKKALLVMDSTRAHITDISKNRIINSNTIPAIIPGGMTK 632
+F +I S +E G + KA+L++D +RAH + + +++ N +P +T
Sbjct: 270 WFHHIFVPSVREHFRTIGLPEDSKAILLLDHSRAHSQE---SELVSENVFTIFLPSSVTS 326
Query: 631 ILQPLDISINRSFKSYIRDLREQWMINGDHSFTKTDRMRRASYLEVVNWVDRAWKSVPSN 452
+LQP + I R+F + IN +F R + + + V RAW +VPS
Sbjct: 327 LLQPTEQGIRRAFM--------RLFINPPVAFQGFP--TRHNINDAIVNVARAWNAVPSQ 376
Query: 451 IIISGFKK 428
+ ++K
Sbjct: 377 VFQRAWRK 384
>sp|O75564|JERKY_HUMAN Jerky protein homolog
Length = 520
Score = 46.2 bits (108), Expect = 1e-04
Identities = 31/128 (24%), Positives = 60/128 (46%)
Frame = -2
Query: 811 YFKYILNGSNKEEMLQRGFFKSKKALLVMDSTRAHITDISKNRIINSNTIPAIIPGGMTK 632
+F +I S +E G + KA+L++DS+RAH + +++SN +P +
Sbjct: 222 WFHHIFVPSVREHFRTIGLPEDSKAVLLLDSSRAHPQEA---ELVSSNVFTIFLPASVAS 278
Query: 631 ILQPLDISINRSFKSYIRDLREQWMINGDHSFTKTDRMRRASYLEVVNWVDRAWKSVPSN 452
++QP++ I R F + + G H+ R + + + V AW +VPS+
Sbjct: 279 LVQPMEQGIRRDFMRNF--INPPVPLQGPHA--------RYNMNDAIFSVACAWNAVPSH 328
Query: 451 IIISGFKK 428
+ ++K
Sbjct: 329 VFRRAWRK 336
>sp|O60035|PDC2_CANAL PDC2 protein
Length = 836
Score = 33.1 bits (74), Expect = 1.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 508 SYLEVVNWVDRAWKSVPSNIIISGFKKPNLF 416
S + + W+ R+W SV S I S +KK +LF
Sbjct: 426 SLIRAIEWITRSWHSVSSERIFSSWKKTHLF 456
>sp|P33744|ADHE_CLOAB Aldehyde-alcohol dehydrogenase [Includes: Alcohol dehydrogenase
(ADH); Acetaldehyde dehydrogenase [acetylating] (ACDH)]
Length = 862
Score = 32.3 bits (72), Expect = 2.0
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 407 DEDLTDNYPDDINETAHKTEIPTAVMDAFHSDTEDENFEGFCEVLEDLTIDDEC 246
DE+ D + I+E IPT++ DA +ENF + + +L +DD+C
Sbjct: 787 DEEKVDLLINKIHELKKALNIPTSIKDA---GVLEENFYSSLDRISELALDDQC 837
>sp|Q9SEV0|BAN_ARATH Leucoanthocyanidin reductase (LAR) (BANYULS) (Anthocyanin spotted
testa) (ast)
Length = 340
Score = 30.8 bits (68), Expect = 5.8
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -2
Query: 691 KNRIINSNTIPAIIPGGMTKILQPLDISINRSF----KSYIRDLREQWMINGDHSFTKTD 524
+N+I IPA+I G P +S++ SF + ++ L+E ++G SF D
Sbjct: 186 ENKINLVTVIPALIAGNSLLSDPPSSLSLSMSFITGKEMHVTGLKEMQKLSGSISFVHVD 245
Query: 523 RMRRA 509
+ RA
Sbjct: 246 DLARA 250
>sp|Q5ZVM2|SERC_LEGPH Phosphoserine aminotransferase (PSAT)
Length = 362
Score = 30.8 bits (68), Expect = 5.8
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 814 KYFKYILNGSNKEEMLQRGFFKSKKALLVMDSTRAHITDISK 689
K F++I EE+ QR K+ K +DST ++T +SK
Sbjct: 251 KMFEWIKKQGGIEELFQRNCLKAAKLYQYLDSTDFYLTPVSK 292
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,762,420
Number of Sequences: 369166
Number of extensions: 1959103
Number of successful extensions: 4487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4483
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)