Planarian EST Database

Dr_sW_020_I18

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_020_I18
         (142 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H0J9|ZCC1_HUMAN  Zinc finger CCCH type domain containin...    28   8.4  

>sp|Q9H0J9|ZCC1_HUMAN Zinc finger CCCH type domain containing protein 1
          Length = 701

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 106 RQHGIVQQMAHLQWNKLCQLIFQ 38
           R HG+     HL +N+LCQL+FQ
Sbjct: 128 RTHGV----DHLSYNELCQLLFQ 146

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.306    0.126    0.326 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,398,772
Number of Sequences: 369166
Number of extensions: 167232
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 68,354,980
effective HSP length: 20
effective length of database: 64,660,280
effective search space used: 1681167280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)