Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_I11
(574 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91924|ARF_DUGJA ADP-ribosylation factor 233 3e-61
sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1 214 2e-55
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 212 6e-55
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 212 6e-55
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 211 8e-55
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 211 8e-55
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 208 7e-54
sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1 208 9e-54
sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 206 3e-53
sp|P34728|ARF_CRYNE ADP-ribosylation factor 204 1e-52
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 233 bits (594), Expect = 3e-61
Identities = 113/113 (100%), Positives = 113/113 (100%)
Frame = +3
Query: 3 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL 182
QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL
Sbjct: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL 130
Query: 183 PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 341
PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK
Sbjct: 131 PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 183
>sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1
Length = 181
Score = 214 bits (544), Expect = 2e-55
Identities = 104/111 (93%), Positives = 105/111 (94%)
Frame = +3
Query: 3 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL 182
QDKIRPLWRHYFQNTQGLIFVVDSNDRERV EAREELMRML EDELRDAVLLVFANKQDL
Sbjct: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDL 130
Query: 183 PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 335
P AMN AE+TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLS LKNRS
Sbjct: 131 PQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 212 bits (539), Expect = 6e-55
Identities = 101/112 (90%), Positives = 106/112 (94%)
Frame = +3
Query: 3 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL 182
QDKIRPLWRHYFQNTQGLIFVVDSNDRER+ EAREELMRML EDELRDAVLL+FANKQDL
Sbjct: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDL 130
Query: 183 PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSK 338
PNAMN AEITDKLGLHSLRNR+WYIQATCATSGDGLYEGLDWLS LKN ++
Sbjct: 131 PNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR 182
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 212 bits (539), Expect = 6e-55
Identities = 102/110 (92%), Positives = 106/110 (96%)
Frame = +3
Query: 3 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL 182
QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDL
Sbjct: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
Query: 183 PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 332
PNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWL+ LKN+
Sbjct: 131 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 211 bits (538), Expect = 8e-55
Identities = 102/110 (92%), Positives = 106/110 (96%)
Frame = +3
Query: 3 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL 182
QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDL
Sbjct: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
Query: 183 PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 332
PNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 131 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 211 bits (538), Expect = 8e-55
Identities = 102/110 (92%), Positives = 106/110 (96%)
Frame = +3
Query: 3 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL 182
QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDL
Sbjct: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
Query: 183 PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 332
PNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 131 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 208 bits (530), Expect = 7e-54
Identities = 101/110 (91%), Positives = 103/110 (93%)
Frame = +3
Query: 3 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL 182
QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RML EDELRDAVLLVF NKQDL
Sbjct: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDL 130
Query: 183 PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 332
PNAMN AEITDKLGLHSLR R+WYIQATCATSGDGLYEGLDWLS LKN+
Sbjct: 131 PNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1
Length = 180
Score = 208 bits (529), Expect = 9e-54
Identities = 98/110 (89%), Positives = 105/110 (95%)
Frame = +3
Query: 3 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL 182
QDKIRPLWRHYFQNTQG+IFVVDSNDRER++EA EEL RMLNEDELRDA+LLVFANKQDL
Sbjct: 71 QDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDL 130
Query: 183 PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 332
PNAMN AEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLST LKN+
Sbjct: 131 PNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180
>sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1
Length = 197
Score = 206 bits (524), Expect = 3e-53
Identities = 99/115 (86%), Positives = 105/115 (91%)
Frame = +3
Query: 3 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL 182
QDKIRPLWRHYFQNTQGLIFVVDSNDR+RVNEAREELMRML EDELRDAVLLVFANKQDL
Sbjct: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
Query: 183 PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK*N 347
PNAMN AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS ++N+ N
Sbjct: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQKANCN 185
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 204 bits (520), Expect = 1e-52
Identities = 97/111 (87%), Positives = 103/111 (92%)
Frame = +3
Query: 3 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDL 182
QDKIRPLWRHYFQNTQG+IFVVDSNDRER+ EAREEL RML+EDELRDA+LLVFANKQDL
Sbjct: 71 QDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDL 130
Query: 183 PNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 335
PNAMN AEITDKLGLHSLR RSWYIQA CATSGDGLYEGL+WLS LK +S
Sbjct: 131 PNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,923,147
Number of Sequences: 369166
Number of extensions: 914549
Number of successful extensions: 2486
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2466
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4226258440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)