Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_H24
(921 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor 468 e-132
sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor 468 e-131
sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor 465 e-131
sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondri... 451 e-126
sp|P23007|CISY_CHICK Citrate synthase, mitochondrial 445 e-125
sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial pre... 388 e-107
sp|P51044|CISY_ASPNG Citrate synthase, mitochondrial precursor 388 e-107
sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor 387 e-107
sp|O00098|CISY_EMENI Citrate synthase, mitochondrial precursor 384 e-106
sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precu... 380 e-105
>sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor
Length = 464
Score = 468 bits (1205), Expect = e-132
Identities = 220/306 (71%), Positives = 264/306 (86%)
Frame = +3
Query: 3 MRGIKGLVTEISVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTE 182
MRG+KGLV E SVLDP+EGIRFRGYSIPECQK+LPK++GGE+PLPEGLF+LL+TG++PTE
Sbjct: 72 MRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQMPTE 131
Query: 183 EQVKWISKEWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSK 362
EQV W+S+EWA RA LP HVV+M++NFP++LHPMSQL AA ALNSES F +AY EG+++
Sbjct: 132 EQVSWLSREWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGMNR 191
Query: 363 SVYWETVYEDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSF 542
+ YWE +YED MDLIAKL VAA IYRNLYR+G+S+G ID+ DWS NF M+GY DP F
Sbjct: 192 AKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSRLDWSHNFTNMLGYTDPQF 251
Query: 543 TELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLW 722
TELMRLYLTIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W
Sbjct: 252 TELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVW 311
Query: 723 VQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDY 902
+ ++ + +G +D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP
Sbjct: 312 LTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYSCQREFALKHLPKD 371
Query: 903 PLFKVV 920
P+FK+V
Sbjct: 372 PMFKLV 377
>sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor
Length = 464
Score = 468 bits (1204), Expect = e-131
Identities = 221/306 (72%), Positives = 262/306 (85%)
Frame = +3
Query: 3 MRGIKGLVTEISVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTE 182
MRG+KGLV E SVLDP+EGIRFRGYSIPECQK+LPK++GGE+PLPEGLF+LL+TG+IPTE
Sbjct: 72 MRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTE 131
Query: 183 EQVKWISKEWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSK 362
EQV W+SKEWA RA LP HVV+M++NFP++LHPMSQL AA ALNSES F +AY EG+ +
Sbjct: 132 EQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHR 191
Query: 363 SVYWETVYEDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSF 542
+ YWE +YED MDLIAKL VAA IYRNLYR+G+S+G ID+ DWS NF M+GY D F
Sbjct: 192 TKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQF 251
Query: 543 TELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLW 722
TELMRLYLTIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W
Sbjct: 252 TELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVW 311
Query: 723 VQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDY 902
+ ++ + +G +D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP
Sbjct: 312 LTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHD 371
Query: 903 PLFKVV 920
P+FK+V
Sbjct: 372 PMFKLV 377
>sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor
Length = 466
Score = 465 bits (1197), Expect = e-131
Identities = 219/306 (71%), Positives = 263/306 (85%)
Frame = +3
Query: 3 MRGIKGLVTEISVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTE 182
MRG+KGLV E SVLDP+EGIRFRG+SIPECQK+LPK++GGE+PLPEGLF+LL+TG IPTE
Sbjct: 72 MRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTE 131
Query: 183 EQVKWISKEWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSK 362
EQV W+SKEWA RA LP HVV+M++NFP++LHPMSQL AA ALNSES F +AY +G+S+
Sbjct: 132 EQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFARAYAQGISR 191
Query: 363 SVYWETVYEDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSF 542
+ YWE +YEDSMDLIAKL VAA IYRNLYR+G+ +G ID++ DWS NF M+GY D F
Sbjct: 192 TKYWELIYEDSMDLIAKLPCVAAKIYRNLYREGSGIGAIDSNLDWSHNFTNMLGYTDHQF 251
Query: 543 TELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLW 722
TEL RLYLTIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W
Sbjct: 252 TELTRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVW 311
Query: 723 VQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDY 902
+ ++ + +G +D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP+
Sbjct: 312 LTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPND 371
Query: 903 PLFKVV 920
P+FK+V
Sbjct: 372 PMFKLV 377
>sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondrial precursor
Length = 468
Score = 451 bits (1159), Expect = e-126
Identities = 216/306 (70%), Positives = 258/306 (84%)
Frame = +3
Query: 3 MRGIKGLVTEISVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTE 182
MR +KG+VTE SVLDPEEGIRFRGYSIPECQK+LPK++GGE+PLPE +++LL TG +P+E
Sbjct: 74 MRSMKGMVTETSVLDPEEGIRFRGYSIPECQKLLPKAKGGEEPLPEAIWWLLCTGDVPSE 133
Query: 183 EQVKWISKEWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSK 362
Q I+KEW +RADLP HVV M++NFP +LHPM+Q +AA AALN+ESKF AY GV+K
Sbjct: 134 AQTAAITKEWNARADLPTHVVRMLDNFPDNLHPMAQFIAAIAALNNESKFAGAYARGVAK 193
Query: 363 SVYWETVYEDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSF 542
+ YWE YEDSMDL+AKL TVAA+IYRNLYRDG++V ID KDWS NF M+GY+DP F
Sbjct: 194 ASYWEYAYEDSMDLLAKLPTVAAIIYRNLYRDGSAVSVIDPKKDWSANFSSMLGYDDPLF 253
Query: 543 TELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLW 722
ELMRLYL IHSDHEGGNVSAHT HLVGSALSDPYLS++AAM GLAGPLHGLANQEVL++
Sbjct: 254 AELMRLYLVIHSDHEGGNVSAHTSHLVGSALSDPYLSFSAAMAGLAGPLHGLANQEVLVF 313
Query: 723 VQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDY 902
+ K++ IG T++ + E++ K LK+GQVVPGYGHAVLRKTDPRY CQREFALKHLP+
Sbjct: 314 LNKIVGEIGFNYTEEQLKEWVWKHLKSGQVVPGYGHAVLRKTDPRYECQREFALKHLPND 373
Query: 903 PLFKVV 920
LFK+V
Sbjct: 374 DLFKLV 379
>sp|P23007|CISY_CHICK Citrate synthase, mitochondrial
Length = 433
Score = 445 bits (1145), Expect = e-125
Identities = 215/306 (70%), Positives = 250/306 (81%)
Frame = +3
Query: 3 MRGIKGLVTEISVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTE 182
MRG+KGLV E SVLDP+EGIRFRG+SIPECQK+LPK G +PLPEGLF+LL+TG+IPT
Sbjct: 45 MRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKGGXGGEPLPEGLFWLLVTGQIPTG 104
Query: 183 EQVKWISKEWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSK 362
QV W+SKEWA RA LP HVV+M++NFP++LHPMSQL AA ALNSES F +AY EG+ +
Sbjct: 105 AQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILR 164
Query: 363 SVYWETVYEDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSF 542
+ YWE VYE +MDLIAKL VAA IYRNLYR G+S+G ID+ DWS NF M+GY D F
Sbjct: 165 TKYWEMVYESAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQF 224
Query: 543 TELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLW 722
TELMRLYLTIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL W
Sbjct: 225 TELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGW 284
Query: 723 VQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDY 902
+ ++ + D + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP
Sbjct: 285 LAQLQKAXXXAGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGD 344
Query: 903 PLFKVV 920
P+FK+V
Sbjct: 345 PMFKLV 350
>sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial precursor
Length = 474
Score = 388 bits (997), Expect = e-107
Identities = 185/306 (60%), Positives = 240/306 (78%)
Frame = +3
Query: 3 MRGIKGLVTEISVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTE 182
MRG+ GL+ E S+LDPEEGIRFRG SIPECQKVLP +Q G +PLPEGL +LLLTGK+P++
Sbjct: 80 MRGMTGLLWETSLLDPEEGIRFRGLSIPECQKVLPTAQSGAEPLPEGLLWLLLTGKVPSK 139
Query: 183 EQVKWISKEWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSK 362
EQV+ +SK+ A+RA +P +V + I+ PS+ HPM+Q + AL +S+F KAY G+ K
Sbjct: 140 EQVEALSKDLANRAAVPDYVYNAIDALPSTAHPMTQFASGVMALQVQSEFQKAYENGIHK 199
Query: 363 SVYWETVYEDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSF 542
S +WE YED ++LIA++ VAA +YR +Y++G S+ D S D+ NF M+G++D
Sbjct: 200 SKFWEPTYEDCLNLIARVPVVAAYVYRRMYKNGDSIPS-DKSLDYGANFSHMLGFDDEKV 258
Query: 543 TELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLW 722
ELMRLY+TIHSDHEGGNVSAHT HLVGSALSDPYLS+AAA+ GLAGPLHGLANQEVLLW
Sbjct: 259 KELMRLYITIHSDHEGGNVSAHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLW 318
Query: 723 VQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDY 902
++ ++E G + + + E++ KTL +G+V+PGYGH VLR TDPRY+CQREFALKHLPD
Sbjct: 319 IKSVVEECGEDISKEQLKEYVWKTLNSGKVIPGYGHGVLRNTDPRYVCQREFALKHLPDD 378
Query: 903 PLFKVV 920
PLF++V
Sbjct: 379 PLFQLV 384
>sp|P51044|CISY_ASPNG Citrate synthase, mitochondrial precursor
Length = 475
Score = 388 bits (997), Expect = e-107
Identities = 197/306 (64%), Positives = 236/306 (77%), Gaps = 1/306 (0%)
Frame = +3
Query: 6 RGIKGLVTEISVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEE 185
RG+K LV E SVLD EEGIRFRG +IPECQ++LPK+ GG++PLPEGLF+LLLTG+IPTE+
Sbjct: 82 RGVKCLVWEGSVLDSEEGIRFRGRTIPECQELLPKAPGGQEPLPEGLFWLLLTGEIPTEQ 141
Query: 186 QVKWISKEWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKS 365
QV+ +S EWA+R+DLP + +I+ PS+LHPMSQ A AL ES F KAY +G++K
Sbjct: 142 QVRDLSAEWAARSDLPKFIEELIDRCPSTLHPMSQFSLAVTALEHESAFAKAYAKGINKK 201
Query: 366 VYWETVYEDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPS-F 542
YW +EDSMDLIAKL T+AA IYRN+++DG V I KD+S N +GY D + F
Sbjct: 202 DYWNYTFEDSMDLIAKLPTIAAKIYRNVFKDG-KVAPIQKDKDYSYNLANQLGYGDNNDF 260
Query: 543 TELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLW 722
ELMRLYLTIHSDHEGGNVSAHT HLVGSALS P LS AA + GLAGPLHGLANQEVL W
Sbjct: 261 VELMRLYLTIHSDHEGGNVSAHTTHLVGSALSSPMLSLAAGLNGLAGPLHGLANQEVLNW 320
Query: 723 VQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDY 902
+ KM IG +D+ I ++ TL AGQVVPGYGHAVLRKTDPRY+ QREFAL+ LPD
Sbjct: 321 LTKMKAAIGNDLSDEAIKNYLWSTLNAGQVVPGYGHAVLRKTDPRYVSQREFALRKLPDD 380
Query: 903 PLFKVV 920
P+FK+V
Sbjct: 381 PMFKLV 386
>sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor
Length = 472
Score = 387 bits (993), Expect = e-107
Identities = 188/306 (61%), Positives = 235/306 (76%)
Frame = +3
Query: 3 MRGIKGLVTEISVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTE 182
MRG+ GL+ E S+LDPEEGIRFRG SIPECQK+LP ++ G +PLPEGL +LLLTGK+PT+
Sbjct: 80 MRGMTGLLWETSLLDPEEGIRFRGLSIPECQKLLPGAKPGGEPLPEGLLWLLLTGKVPTK 139
Query: 183 EQVKWISKEWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSK 362
EQV +S E SRA +P HV I+ P + HPM+Q AL +S+F KAY +G+ K
Sbjct: 140 EQVDALSAELRSRAAVPEHVYKTIDALPVTAHPMTQFATGVMALQVQSEFQKAYEKGIHK 199
Query: 363 SVYWETVYEDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSF 542
+ YWE YEDS+ LIA+L VAA IYR +Y++G S+ D+S D+ NF M+GY+ PS
Sbjct: 200 TKYWEPTYEDSITLIAQLPVVAAYIYRRMYKNGQSIST-DDSLDYGANFAHMLGYDSPSM 258
Query: 543 TELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLW 722
ELMRLY+TIH+DHEGGNVSAHT HLV SALSDPYLS+AAA+ GLAGPLHGLANQEVLLW
Sbjct: 259 QELMRLYVTIHTDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLW 318
Query: 723 VQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDY 902
++ ++ G T + + ++I KTL +G+VVPGYGH VLR TDPRY+CQREFALKHLPD
Sbjct: 319 IKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHGVLRNTDPRYICQREFALKHLPDD 378
Query: 903 PLFKVV 920
PLF++V
Sbjct: 379 PLFQLV 384
>sp|O00098|CISY_EMENI Citrate synthase, mitochondrial precursor
Length = 474
Score = 384 bits (986), Expect = e-106
Identities = 192/306 (62%), Positives = 236/306 (77%), Gaps = 1/306 (0%)
Frame = +3
Query: 6 RGIKGLVTEISVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTEE 185
RG+K LV E SVLD EEGIRFRG +IPECQK+LPK+ GGE+PLPEGLF+LLLTG++P+E+
Sbjct: 82 RGVKCLVWEGSVLDSEEGIRFRGLTIPECQKLLPKAPGGEEPLPEGLFWLLLTGEVPSEQ 141
Query: 186 QVKWISKEWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKS 365
QV+ +S EWA+R+DLP + +I+ PS+LHPM+Q A AL ES F KA +G++K
Sbjct: 142 QVRDLSAEWAARSDLPKFIEELIDRVPSTLHPMAQFSLAVTALEHESAFAKATAKGINKK 201
Query: 366 VYWETVYEDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYED-PSF 542
YW +EDSMDLIAKL T+AA IYRN+++DG V I KD+S N +G+ D F
Sbjct: 202 EYWHYTFEDSMDLIAKLPTIAAKIYRNVFKDG-KVAPIQKDKDYSYNLANQLGFADNKDF 260
Query: 543 TELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLW 722
ELMRLYLTIHSDHEGGNVSAHT HLVGSALS P LS AA + GLAGPLHGLANQEVL W
Sbjct: 261 VELMRLYLTIHSDHEGGNVSAHTTHLVGSALSSPMLSLAAGLNGLAGPLHGLANQEVLNW 320
Query: 723 VQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDY 902
+ +M +V+G +D+ I +++ TL AG+VVPGYGHAVLRKTDPRY QREFAL+ LPD
Sbjct: 321 LTEMKKVVGNDLSDQSIKDYLWSTLNAGRVVPGYGHAVLRKTDPRYTSQREFALRKLPDD 380
Query: 903 PLFKVV 920
P+FK+V
Sbjct: 381 PMFKLV 386
>sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precursor
Length = 479
Score = 380 bits (976), Expect = e-105
Identities = 186/306 (60%), Positives = 235/306 (76%)
Frame = +3
Query: 3 MRGIKGLVTEISVLDPEEGIRFRGYSIPECQKVLPKSQGGEQPLPEGLFFLLLTGKIPTE 182
MRGIKGLV E SVLDPEEGIRFRG +IPE Q+ LPK++G +PLPE LF+LLLTG+IPT+
Sbjct: 84 MRGIKGLVWEGSVLDPEEGIRFRGRTIPEIQRELPKAEGSTEPLPEALFWLLLTGEIPTD 143
Query: 183 EQVKWISKEWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSK 362
QVK +S + A+R+++P HV+ ++++ P LHPM+Q A AL SESKF KAY +GVSK
Sbjct: 144 AQVKALSADLAARSEIPEHVIQLLDSLPKDLHPMAQFSIAVTALESESKFAKAYAQGVSK 203
Query: 363 SVYWETVYEDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSF 542
YW +EDS+DL+ KL +A+ IYRN+++DG + D + D+ +N +++GYE+ F
Sbjct: 204 KEYWSYTFEDSLDLLGKLPVIASKIYRNVFKDG-KITSTDPNADYGKNLAQLLGYENKDF 262
Query: 543 TELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLW 722
+LMRLYLTIHSDHEGGNVSAHT HLVGSALS PYLS AA + GLAGPLHG ANQEVL W
Sbjct: 263 IDLMRLYLTIHSDHEGGNVSAHTTHLVGSALSSPYLSLAAGLNGLAGPLHGRANQEVLEW 322
Query: 723 VQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDY 902
+ K+ E + + + I +++ TL AG+VVPGYGHAVLRKTDPRY QREFALKH PDY
Sbjct: 323 LFKLREEVKGDYSKETIEKYLWDTLNAGRVVPGYGHAVLRKTDPRYTAQREFALKHFPDY 382
Query: 903 PLFKVV 920
LFK+V
Sbjct: 383 ELFKLV 388
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,347,199
Number of Sequences: 369166
Number of extensions: 2484369
Number of successful extensions: 6813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6652
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9414689480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)