Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_H19-2
(225 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8N3U4|STAG2_HUMAN Cohesin subunit SA-2 (Stromal antigen... 30 1.7
sp|O35638|STAG2_MOUSE Cohesin subunit SA-2 (Stromal antigen... 30 1.7
sp|Q97T80|ZMPC_STRPN Zinc metalloprotease zmpC precursor (M... 29 3.8
sp|P23220|AT2B1_PIG Plasma membrane calcium-transporting AT... 28 6.4
sp|P41786|PRGK_SALTY Lipoprotein prgK precursor 28 6.4
sp|Q6FRH2|ATG11_CANGA Autophagy-related protein 11 28 6.4
sp|P13543|MLR_AEQIR Myosin regulatory light chain, striated... 28 6.4
sp|Q9YHB5|CND3_XENLA Condensin complex subunit 3 (Chromosom... 28 6.4
sp|Q00804|AT2B1_RABIT Plasma membrane calcium-transporting ... 28 6.4
sp|P11505|AT2B1_RAT Plasma membrane calcium-transporting AT... 28 6.4
>sp|Q8N3U4|STAG2_HUMAN Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2)
Length = 1231
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +3
Query: 36 EDHRTNNENNKNSCGIFDSTSEKVVEIKDIKSYLE------NDGQDIDRFEIYLPESEN 194
E H+T + N+ + + E +VE D+ E N+G D D +I LP S+N
Sbjct: 1147 EHHQTPLDYNRRGTSLMEDDEEPIVE--DVMMSSEGRIEDLNEGMDFDTMDIDLPPSKN 1203
>sp|O35638|STAG2_MOUSE Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2)
Length = 1231
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +3
Query: 36 EDHRTNNENNKNSCGIFDSTSEKVVEIKDIKSYLE------NDGQDIDRFEIYLPESEN 194
E H+T + N+ + + E +VE D+ E N+G D D +I LP S+N
Sbjct: 1147 EHHQTPLDYNRRGTSLMEDDEEPIVE--DVMMSSEGRIEDLNEGMDFDTMDIDLPPSKN 1203
>sp|Q97T80|ZMPC_STRPN Zinc metalloprotease zmpC precursor (MMP-9 protease)
Length = 1856
Score = 28.9 bits (63), Expect = 3.8
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +3
Query: 33 YEDHRTNNENNKNSCGIFDSTSEKVVEIKDIKSYLENDGQDIDRFEIYLPESE 191
Y N EN + S F +K+ EIKDI S +E G++ DR+ YL SE
Sbjct: 574 YNLGENNEENTETSTQDFQLEYKKI-EIKDIDS-VELYGKENDRYRRYLSLSE 624
>sp|P23220|AT2B1_PIG Plasma membrane calcium-transporting ATPase 1 (PMCA1) (Plasma
membrane calcium pump isoform 1)
Length = 1220
Score = 28.1 bits (61), Expect = 6.4
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +3
Query: 36 EDHRTNNENNKNSCGIFDSTSEK------VVEIKDIKSYLENDGQDIDRFEIYLPESENS 197
+D + + NK G ++ ++ +E++ +KS DG + D+ + LP+ E S
Sbjct: 301 KDEKKKEKKNKKQDGAIENRNKAKAQDGAAMEMQPLKSEEGGDGDEKDKKKANLPKKEKS 360
Query: 198 IL 203
+L
Sbjct: 361 VL 362
>sp|P41786|PRGK_SALTY Lipoprotein prgK precursor
Length = 252
Score = 28.1 bits (61), Expect = 6.4
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 21 DIKIYEDHRTNNENNKNSCGIFDSTSEKVVEIKDIKSYLENDGQDIDRFEIYLPESENS 197
DI E+ R + ++ +++ S +I DIK +L+N D+D I + SE S
Sbjct: 133 DIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVVLSERS 191
>sp|Q6FRH2|ATG11_CANGA Autophagy-related protein 11
Length = 1110
Score = 28.1 bits (61), Expect = 6.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 54 NENNKNSCGIFDSTSEKVVEIKDIKSYLENDGQDIDRFEIYLPESENS 197
N+NN ++C +F S+ +K+ E K +S + N +DI+ L + S
Sbjct: 917 NDNNISNCELFISSVKKIYENKLFESAVINRFKDIETLAKRLTKENKS 964
>sp|P13543|MLR_AEQIR Myosin regulatory light chain, striated adductor muscle (R-LC)
Length = 157
Score = 28.1 bits (61), Expect = 6.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 51 NNENNKNSCGIFDSTSEKVVEIKDIKSYLENDGQDIDRFEIYLPESE 191
+ E +N+ +FD K + I+ IK LEN G + ++ E+ + E
Sbjct: 86 SEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKE 132
>sp|Q9YHB5|CND3_XENLA Condensin complex subunit 3 (Chromosome-associated protein G)
(Chromosome assembly protein xCAP-G) (Condensin subunit
CAP-G)
Length = 1034
Score = 28.1 bits (61), Expect = 6.4
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +3
Query: 36 EDHRTNNENNKNSCGIFDSTSEKVVEIKDIKSYLENDGQDIDRFEIYLPESENSILNQCI 215
ED TN + ++ S EKV E++ +K+ L + ++ + EI + +++ L +C+
Sbjct: 508 EDSLTNEDYSRAS-----ELKEKVKELESLKTQLIKEAEEPEMKEIRVEKNDPETLLKCL 562
Query: 216 I 218
I
Sbjct: 563 I 563
>sp|Q00804|AT2B1_RABIT Plasma membrane calcium-transporting ATPase 1 (PMCA1) (Plasma
membrane calcium pump isoform 1)
Length = 1249
Score = 28.1 bits (61), Expect = 6.4
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +3
Query: 36 EDHRTNNENNKNSCGIFDSTSE------KVVEIKDIKSYLENDGQDIDRFEIYLPESENS 197
+D + + NK G ++ ++ + +E++ +KS DG + D+ + LP+ E S
Sbjct: 301 KDEKKKEKKNKKQDGAIENRNKAKAQDGEPMEMQPLKSEEGGDGDEKDKKKANLPKKEKS 360
Query: 198 IL 203
+L
Sbjct: 361 VL 362
>sp|P11505|AT2B1_RAT Plasma membrane calcium-transporting ATPase 1 (PMCA1) (Plasma
membrane calcium pump isoform 1) (Plasma membrane
calcium ATPase isoform 1)
Length = 1258
Score = 28.1 bits (61), Expect = 6.4
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +3
Query: 36 EDHRTNNENNKNSCGIFDSTSEK------VVEIKDIKSYLENDGQDIDRFEIYLPESENS 197
+D + + NK G ++ ++ +E++ +KS DG + D+ + LP+ E S
Sbjct: 301 KDEKKKEKKNKKQDGAIENRNKAKAQDGAAMEMQPLKSEEGGDGDEKDKKKANLPKKEKS 360
Query: 198 IL 203
+L
Sbjct: 361 VL 362
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,286,543
Number of Sequences: 369166
Number of extensions: 291918
Number of successful extensions: 1140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)