Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_H14
(444 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CPV7|ZDHC6_MOUSE Probable palmitoyltransferase ZDHHC6 ... 40 0.002
sp|Q9H6R6|ZDHC6_HUMAN Probable palmitoyltransferase ZDHHC6 ... 40 0.003
sp|Q98KH9|TYSY_RHILO Thymidylate synthase (TS) (TSase) 32 0.82
sp|P06163|RRPP_PI3B Phosphoprotein (P protein) 30 3.1
sp|Q82S98|SSB_NITEU Single-strand binding protein (SSB) (He... 29 4.0
sp|P43322|NRG1_RAT Pro-neuregulin-1, membrane-bound isoform... 28 6.9
sp|Q74ZL3|MSC3_ASHGO Meiotic sister-chromatid recombination... 28 6.9
sp|Q89G35|TYSY_BRAJA Thymidylate synthase (TS) (TSase) 28 6.9
sp|Q8BU03|PWP2_MOUSE Periodic tryptophan protein 2 homolog 28 9.0
sp|P25627|BUD23_YEAST Putative methyltransferase BUD23 (Bud... 28 9.0
>sp|Q9CPV7|ZDHC6_MOUSE Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6) (H4 homolog)
Length = 413
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/98 (25%), Positives = 41/98 (41%)
Frame = +1
Query: 4 SPCTDENRLPVKPGQIVMVTRWRKHWLYGQILSVAASRSSHASISTEAVESSQQRRVATK 183
SPCT+E R+ ++ G+ ++ TR ++WLYG + + +E +
Sbjct: 341 SPCTEEPRIRLQKGEFILATRGLRYWLYGDKI-----------LDDSFIEGT-------- 381
Query: 184 RANSRGWFPAVCARQKYLGDEGGTAVPQKADRNGDSQP 297
+ RGWFP C +K +GDS P
Sbjct: 382 -SRVRGWFPRNCV--------------EKCPCDGDSDP 404
>sp|Q9H6R6|ZDHC6_HUMAN Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6) (Zinc finger
protein 376) (Transmembrane protein H4)
sp|Q5REH2|ZDHC6_PONPY Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6)
Length = 413
Score = 39.7 bits (91), Expect = 0.003
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +1
Query: 4 SPCTDENRLPVKPGQIVMVTRWRKHWLYGQILSVAASRSSHASISTEAVESSQQRRVATK 183
SPCT+E R+ ++ G+ ++ TR ++WLYG + + +E
Sbjct: 341 SPCTEEPRIQLQKGEFILATRGLRYWLYGDKI-----------LDDSFIEGV-------- 381
Query: 184 RANSRGWFPAVCARQ 228
+ RGWFP C +
Sbjct: 382 -SRIRGWFPRKCVEK 395
>sp|Q98KH9|TYSY_RHILO Thymidylate synthase (TS) (TSase)
Length = 264
Score = 31.6 bits (70), Expect = 0.82
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Frame = +1
Query: 82 LYGQILSVAASRSSHASISTEAVESSQQRR--------VATKRANSRG------WFPAVC 219
L +L A RS T +V Q R TK+ + + WF A
Sbjct: 7 LLQHVLDNGADRSDRTGTGTRSVFGYQMRFDLARGFPVTTTKKLHLKSIIHELLWFLAGD 66
Query: 220 ARQKYLGDEGGTAVPQKADRNGDSQPNSSRHAKS 321
KYL D G T + AD NGD P R +S
Sbjct: 67 TNIKYLTDHGVTIWDEWADENGDLGPVYGRQWRS 100
>sp|P06163|RRPP_PI3B Phosphoprotein (P protein)
Length = 596
Score = 29.6 bits (65), Expect = 3.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 150 RILSATARSNEESQQSRMVPSRVRSTEISXXXXXNGGPPEGRSKR*FSTE 299
+I S RSN+ES +R+VP R +T S N R+K+ + E
Sbjct: 523 QIKSDINRSNDESNATRLVPKRTSNTMRSLIIIINNSNLSSRAKQSYINE 572
>sp|Q82S98|SSB_NITEU Single-strand binding protein (SSB) (Helix-destabilizing protein)
Length = 149
Score = 29.3 bits (64), Expect = 4.0
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +1
Query: 37 KPGQIVMVTRWRKHWLYGQILSVAASRSSHASISTEAVESSQQRRVATKRANSRGWFPAV 216
K G+ T W + ++G+ +A S +E Q R T ++N + +
Sbjct: 42 KGGEKQERTEWHRVVMFGKQAEIAGEYLKKGS--QIYIEGRLQTRKWTDKSNVERYTTEI 99
Query: 217 CARQKYL--GDEGGTAVPQKADRNGDSQPNSSRHAKSD 324
A + + G GG + ADR+ D Q S+ AKS+
Sbjct: 100 VADRMQMLGGRSGGGSYDPPADRDHDYQSQSTPPAKSN 137
>sp|P43322|NRG1_RAT Pro-neuregulin-1, membrane-bound isoform precursor (Pro-NRG1)
[Contains: Neuregulin-1 (Neu differentiation factor)
(Heregulin) (HRG) (Acetylcholine receptor-inducing
activity) (ARIA) (Sensory and motor neuron-derived
factor) (Glial growth factor)]
Length = 662
Score = 28.5 bits (62), Expect = 6.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 310 VWRNSVENHRFDRPSGGPPFRLH 242
+ +SVEN R P+GGP RLH
Sbjct: 394 IMMSSVENSRHSSPAGGPRGRLH 416
>sp|Q74ZL3|MSC3_ASHGO Meiotic sister-chromatid recombination protein 3
Length = 751
Score = 28.5 bits (62), Expect = 6.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 85 YGQILSVAASRSSHASISTEAVESSQQRRVATKRANSRGWFPAVCA 222
YG+ S+ A+R S+ S QRR + R+N+ PAV A
Sbjct: 66 YGRTRSLGAARPSYLGAPPRTYSMSSQRRANSLRSNNGFGPPAVAA 111
>sp|Q89G35|TYSY_BRAJA Thymidylate synthase (TS) (TSase)
Length = 264
Score = 28.5 bits (62), Expect = 6.9
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Frame = +1
Query: 82 LYGQILSVAASRSSHASISTEAVESSQQR--------RVATKRANSRG------WFPAVC 219
L +ILS A ++ T +V Q R + TKR + WF
Sbjct: 7 LLERILSDGAEKTDRTGTGTLSVFGHQMRFNLSAGFPMLTTKRLPLKAIVHELLWFLKGD 66
Query: 220 ARQKYLGDEGGTAVPQKADRNGDSQP 297
KYL D G T + AD NGD P
Sbjct: 67 TNIKYLRDNGVTIWDEWADANGDLGP 92
>sp|Q8BU03|PWP2_MOUSE Periodic tryptophan protein 2 homolog
Length = 919
Score = 28.1 bits (61), Expect = 9.0
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +1
Query: 130 SISTEAVESSQQRRVATKRANSRGWFPAVCARQKYLGDEGGTAVPQKADRNGDSQPNSSR 309
++S +A+E RR T+ N + + G+E G AVP R GD SSR
Sbjct: 648 NLSLDAMEEFLNRRKMTEFGN-------LALIDQDAGEENGVAVPLPGVRKGDM---SSR 697
Query: 310 HAKSD 324
H K +
Sbjct: 698 HFKPE 702
>sp|P25627|BUD23_YEAST Putative methyltransferase BUD23 (Bud site selection protein 23)
Length = 275
Score = 28.1 bits (61), Expect = 9.0
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -2
Query: 308 LEEFG*ESPFRSAFWGTAVPPSSPRYFCRAHTAGNHP--RLLALF 180
L++ G PFR+ + A+ S+ ++ C A T+ N P RL+ F
Sbjct: 97 LQDMGTGIPFRAGSFDAAISISAIQWLCNADTSYNDPKQRLMRFF 141
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,672,278
Number of Sequences: 369166
Number of extensions: 836715
Number of successful extensions: 2572
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2570
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)