Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_H05
(915 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35286|DHX15_MOUSE Putative pre-mRNA splicing factor RNA... 526 e-149
sp|O43143|DHX15_HUMAN Putative pre-mRNA splicing factor RNA... 526 e-149
sp|Q20875|DHX15_CAEEL Putative pre-mRNA splicing factor ATP... 498 e-140
sp|O22899|DHX15_ARATH Putative pre-mRNA splicing factor ATP... 484 e-136
sp|O17438|DHX15_STRPU Putative pre-mRNA splicing factor ATP... 437 e-122
sp|P53131|PRP43_YEAST Pre-mRNA splicing factor RNA helicase... 403 e-112
sp|O42945|DHX15_SCHPO Probable pre-mRNA splicing factor RNA... 395 e-110
sp|Q14562|DHX8_HUMAN ATP-dependent helicase DHX8 (RNA helic... 284 2e-76
sp|Q38953|DHX8_ARATH Putative pre-mRNA splicing factor ATP-... 284 3e-76
sp|O42643|DHX8_SCHPO Putative pre-mRNA splicing factor ATP-... 282 8e-76
>sp|O35286|DHX15_MOUSE Putative pre-mRNA splicing factor RNA helicase (DEAH box protein 15)
Length = 795
Score = 526 bits (1356), Expect = e-149
Identities = 257/304 (84%), Positives = 278/304 (91%)
Frame = +3
Query: 3 TSLTIDGVVFVIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLY 182
TSLTIDGVVFVIDPGFAKQKV+NPRIRVESLLVT ISKAS TRPGKCFRLY
Sbjct: 426 TSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLY 485
Query: 183 TEKGYNNEMHENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 362
TEK Y EM +NTYPEILRSNLG+VVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY
Sbjct: 486 TEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 545
Query: 363 LAALDDDGNLTDLGSMMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVRPTE 542
LAAL+DDG+LT+LGSMMAEFPLDPQLAKMVIASCD+NCSNE+LSITAMLSVPQCFVRPTE
Sbjct: 546 LAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTE 605
Query: 543 ARTAADEAKMGFAHIDGDHLTMLNVYHAFKQNREDSQWCYEHFVNYRSLKAADNVRIQLS 722
A+ AADEAKM FAHIDGDHLT+LNVYHAFKQN E QWCY++F+NYRSL +ADNVR QLS
Sbjct: 606 AKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLS 665
Query: 723 RIMDRFNLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPST 902
RIMDRFNL R STDF+S+DYY+NIRKALV+G+FMQVAHLER+GHYLTVKDNQ+V LHPST
Sbjct: 666 RIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPST 725
Query: 903 CLDH 914
LDH
Sbjct: 726 VLDH 729
>sp|O43143|DHX15_HUMAN Putative pre-mRNA splicing factor RNA helicase (DEAH box protein 15)
(ATP-dependent RNA helicase #46)
Length = 795
Score = 526 bits (1356), Expect = e-149
Identities = 257/304 (84%), Positives = 278/304 (91%)
Frame = +3
Query: 3 TSLTIDGVVFVIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLY 182
TSLTIDGVVFVIDPGFAKQKV+NPRIRVESLLVT ISKAS TRPGKCFRLY
Sbjct: 426 TSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLY 485
Query: 183 TEKGYNNEMHENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 362
TEK Y EM +NTYPEILRSNLG+VVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY
Sbjct: 486 TEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 545
Query: 363 LAALDDDGNLTDLGSMMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVRPTE 542
LAAL+DDG+LT+LGSMMAEFPLDPQLAKMVIASCD+NCSNE+LSITAMLSVPQCFVRPTE
Sbjct: 546 LAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTE 605
Query: 543 ARTAADEAKMGFAHIDGDHLTMLNVYHAFKQNREDSQWCYEHFVNYRSLKAADNVRIQLS 722
A+ AADEAKM FAHIDGDHLT+LNVYHAFKQN E QWCY++F+NYRSL +ADNVR QLS
Sbjct: 606 AKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLS 665
Query: 723 RIMDRFNLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPST 902
RIMDRFNL R STDF+S+DYY+NIRKALV+G+FMQVAHLER+GHYLTVKDNQ+V LHPST
Sbjct: 666 RIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPST 725
Query: 903 CLDH 914
LDH
Sbjct: 726 VLDH 729
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA splicing factor ATP-dependent RNA helicase F56D2.6
Length = 739
Score = 498 bits (1281), Expect = e-140
Identities = 239/304 (78%), Positives = 270/304 (88%)
Frame = +3
Query: 3 TSLTIDGVVFVIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLY 182
TSLTIDGVVFVIDPGF+KQKV+NPRIRVESLLV PISKAS T+PGKCFRLY
Sbjct: 370 TSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVCPISKASAMQRAGRAGRTKPGKCFRLY 429
Query: 183 TEKGYNNEMHENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 362
TE Y +EM + TYPEILRSNLG+VVLQLKKLG +DLVHFDFMDPPAPETLMRALELLNY
Sbjct: 430 TETAYGSEMQDQTYPEILRSNLGSVVLQLKKLGTEDLVHFDFMDPPAPETLMRALELLNY 489
Query: 363 LAALDDDGNLTDLGSMMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVRPTE 542
L A++DDG LT+LGS+MAEFPLDPQLAKM+I S + NCSNEILSITAMLSVPQC+VRP E
Sbjct: 490 LQAINDDGELTELGSLMAEFPLDPQLAKMLITSTELNCSNEILSITAMLSVPQCWVRPNE 549
Query: 543 ARTAADEAKMGFAHIDGDHLTMLNVYHAFKQNREDSQWCYEHFVNYRSLKAADNVRIQLS 722
RT ADEAK FAHIDGDHLT+LNVYH+FKQN+ED QWCY++F+NYR++K AD VR QLS
Sbjct: 550 MRTEADEAKARFAHIDGDHLTLLNVYHSFKQNQEDPQWCYDNFINYRTMKTADTVRTQLS 609
Query: 723 RIMDRFNLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPST 902
R+MD++NLRR STDF S+DYY+NIRKALV+GFFMQVAHLERSGHY+TVKDNQ+V+LHPST
Sbjct: 610 RVMDKYNLRRVSTDFKSRDYYLNIRKALVAGFFMQVAHLERSGHYVTVKDNQLVNLHPST 669
Query: 903 CLDH 914
LDH
Sbjct: 670 VLDH 673
>sp|O22899|DHX15_ARATH Putative pre-mRNA splicing factor ATP-dependent RNA helicase
Length = 729
Score = 484 bits (1247), Expect = e-136
Identities = 230/304 (75%), Positives = 264/304 (86%)
Frame = +3
Query: 3 TSLTIDGVVFVIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLY 182
TSLTIDG+V+VIDPGFAKQKV+NPRIRVESLLV+PISKAS TRPGKCFRLY
Sbjct: 357 TSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLY 416
Query: 183 TEKGYNNEMHENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 362
TEK +NN++ TYPEILRSNL VL LKKLGIDDLVHFDFMDPPAPETLMRALE+LNY
Sbjct: 417 TEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNY 476
Query: 363 LAALDDDGNLTDLGSMMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVRPTE 542
L ALDD+GNLT G +M+EFPLDPQ++KM+I S +FNCSNEILS++AMLSVP CFVRP E
Sbjct: 477 LGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRpre 536
Query: 543 ARTAADEAKMGFAHIDGDHLTMLNVYHAFKQNREDSQWCYEHFVNYRSLKAADNVRIQLS 722
A+ AADEAK F HIDGDHLT+LNVYHA+KQN ED WC+E+FVN R++K+ADNVR QL
Sbjct: 537 AQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLV 596
Query: 723 RIMDRFNLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPST 902
RIM RFNL+ STDF+S+DYYVNIRKA+++G+FMQVAHLER+GHYLTVKDNQ+VHLHPS
Sbjct: 597 RIMSRFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSN 656
Query: 903 CLDH 914
CLDH
Sbjct: 657 CLDH 660
>sp|O17438|DHX15_STRPU Putative pre-mRNA splicing factor ATP-dependent RNA helicase PRP1
Length = 455
Score = 437 bits (1124), Expect = e-122
Identities = 214/262 (81%), Positives = 237/262 (90%)
Frame = +3
Query: 3 TSLTIDGVVFVIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLY 182
TSLTIDGVVFVIDPGFAKQKV+NPRIRVESLLV+PISKAS TRPGKCFRLY
Sbjct: 194 TSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRVGRAGRTRPGKCFRLY 253
Query: 183 TEKGYNNEMHENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 362
TEK Y++EM +NTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY
Sbjct: 254 TEKAYDSEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 313
Query: 363 LAALDDDGNLTDLGSMMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVRPTE 542
L ALDD G+LT LGSMMAEFPLDPQLAKMVIAS D++CSNEILS+TAMLSVPQCF+RP E
Sbjct: 314 LGALDDSGDLTRLGSMMAEFPLDPQLAKMVIASTDYSCSNEILSVTAMLSVPQCFLRPNE 373
Query: 543 ARTAADEAKMGFAHIDGDHLTMLNVYHAFKQNREDSQWCYEHFVNYRSLKAADNVRIQLS 722
A+ ADEAKM FAHIDGDHLT+LNVYHAFKQN ED QWCY++F+ YRSLK+AD+VR QL+
Sbjct: 374 AKKLADEAKMRFAHIDGDHLTLLNVYHAFKQNNEDPQWCYDNFIQYRSLKSADSVRQQLA 433
Query: 723 RIMDRFNLRRSSTDFSSKDYYV 788
RIMDRF L+R+ST+F+SKDYY+
Sbjct: 434 RIMDRFALQRTSTNFNSKDYYL 455
>sp|P53131|PRP43_YEAST Pre-mRNA splicing factor RNA helicase PRP43 (Helicase JA1)
Length = 767
Score = 403 bits (1036), Expect = e-112
Identities = 202/310 (65%), Positives = 244/310 (78%), Gaps = 6/310 (1%)
Frame = +3
Query: 3 TSLTIDGVVFVIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLY 182
TSLTIDG+V+V+DPGF+KQKV+NPRIRVESLLV+PISKAS TRPGKCFRLY
Sbjct: 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLY 440
Query: 183 TEKGYNNEMHENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 362
TE+ + E+ E +YPEILRSNL + VL+LKKLGIDDLVHFDFMDPPAPET+MRALE LNY
Sbjct: 441 TEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNY 500
Query: 363 LAALDDDGNLTDLGSMMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVRPTE 542
LA LDD+GNLT LG + ++FPLDP LA M+I S +F CS EIL+I AMLSVP F+RPT+
Sbjct: 501 LACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTK 560
Query: 543 ARTAADEAKMGFAHIDGDHLTMLNVYHAFKQNREDS----QWCYEHFVNYRSLKAADNVR 710
+ AD+AK FAH DGDH+T+LNVYHAFK + +WC +H++NYRSL AADN+R
Sbjct: 561 DKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIR 620
Query: 711 IQLSRIMDRFNLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSG--HYLTVKDNQIV 884
QL R+M+R+NL ++TD+ S Y+ NIRKAL SGFFMQVA +RSG Y+TVKDNQ V
Sbjct: 621 SQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAK-KRSGAKGYITVKDNQDV 679
Query: 885 HLHPSTCLDH 914
+HPST L H
Sbjct: 680 LIHPSTVLGH 689
>sp|O42945|DHX15_SCHPO Probable pre-mRNA splicing factor RNA helicase prp43
Length = 735
Score = 395 bits (1016), Expect = e-110
Identities = 194/300 (64%), Positives = 235/300 (78%), Gaps = 1/300 (0%)
Frame = +3
Query: 3 TSLTIDGVVFVIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLY 182
TSLTIDG+V+V+DPGF+KQK++NPRIRVESLLV+PISKAS TRPGKCFRLY
Sbjct: 363 TSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLY 422
Query: 183 TEKGYNNEMHENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 362
TE+ + E+ E TYPEILRSNL + VL+LKKLGIDDLVHFD+MDPPAPET+MRALE LNY
Sbjct: 423 TEEAFRKELIEQTYPEILRSNLSSTVLELKKLGIDDLVHFDYMDPPAPETMMRALEELNY 482
Query: 363 LAALDDDGNLTDLGSMMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVRPTE 542
L LDD+G+LT LG +EFPLDP LA M+I S +F CSNE+LS+TA+LSVP FVRP
Sbjct: 483 LNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLTALLSVPNVFVRPNS 542
Query: 543 ARTAADEAKMGFAHIDGDHLTMLNVYHAFKQNREDSQWCYEHFVNYRSLKAADNVRIQLS 722
AR ADE + F H DGDHLT+LNVYHA+K + WC+ HF+++R+L +ADNVR QL
Sbjct: 543 ARKLADEMRQQFTHPDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADNVRKQLR 602
Query: 723 RIMDRFNLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSG-HYLTVKDNQIVHLHPS 899
R M+R + ST F K+YYVNIR+ALVSGFFMQVA +G +Y+T+KDNQ+V LHPS
Sbjct: 603 RTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPS 662
>sp|Q14562|DHX8_HUMAN ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8)
Length = 1220
Score = 284 bits (727), Expect = 2e-76
Identities = 146/302 (48%), Positives = 197/302 (65%)
Frame = +3
Query: 3 TSLTIDGVVFVIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLY 182
TSLTIDG+ +V+DPGF KQKV+N + ++ L+VTPIS+A T PGKC+RLY
Sbjct: 844 TSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLY 903
Query: 183 TEKGYNNEMHENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 362
TE+ Y +EM PEI R+NL + VL LK +GI+DL+ FDFMD P ETL+ A+E L
Sbjct: 904 TERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYT 963
Query: 363 LAALDDDGNLTDLGSMMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVRPTE 542
L ALDD+G LT LG MAEFPL+P L KM+I S CS E+L+I +MLSV F RP +
Sbjct: 964 LGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKD 1023
Query: 543 ARTAADEAKMGFAHIDGDHLTMLNVYHAFKQNREDSQWCYEHFVNYRSLKAADNVRIQLS 722
+ AD+ K F +GDHLT+L VY+++K N+ + WCYE+F+ RSL+ A ++R Q+
Sbjct: 1024 KQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQML 1083
Query: 723 RIMDRFNLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPST 902
IMDR L S S+ V ++KA+ SGFF A + Y T+ D Q+V++HPS+
Sbjct: 1084 GIMDRHKLDVVSCGKST----VRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSS 1139
Query: 903 CL 908
L
Sbjct: 1140 AL 1141
>sp|Q38953|DHX8_ARATH Putative pre-mRNA splicing factor ATP-dependent RNA helicase
Length = 1168
Score = 284 bits (726), Expect = 3e-76
Identities = 144/301 (47%), Positives = 196/301 (65%)
Frame = +3
Query: 6 SLTIDGVVFVIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLYT 185
SLTIDG+ +V+DPGFAKQ V+NP+ +ESL++TPIS+AS T PGKC+RLYT
Sbjct: 795 SLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYT 854
Query: 186 EKGYNNEMHENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYL 365
E Y NEM + PEI R NLG L +K +GI+DL+ FDFMDPP P+ L+ A+E L L
Sbjct: 855 ESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSL 914
Query: 366 AALDDDGNLTDLGSMMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVRPTEA 545
ALD++G LT LG MAEFPL+P L+KM++AS D CS+EIL++ AM+ F RP E
Sbjct: 915 GALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRpreK 974
Query: 546 RTAADEAKMGFAHIDGDHLTMLNVYHAFKQNREDSQWCYEHFVNYRSLKAADNVRIQLSR 725
+ AD+ + F +GDHLT+L VY A+K WC+E+F+ RSL+ A +VR QL
Sbjct: 975 QAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFIQSRSLRRAQDVRKQLLS 1034
Query: 726 IMDRFNLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPSTC 905
IMD++ L ++ + IRKA+ +GFF A + Y T+ +NQ V++HPS+
Sbjct: 1035 IMDKYKL----DVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSA 1090
Query: 906 L 908
L
Sbjct: 1091 L 1091
>sp|O42643|DHX8_SCHPO Putative pre-mRNA splicing factor ATP-dependent RNA helicase
C10F6.02c
Length = 1168
Score = 282 bits (722), Expect = 8e-76
Identities = 146/303 (48%), Positives = 199/303 (65%), Gaps = 1/303 (0%)
Frame = +3
Query: 3 TSLTIDGVVFVIDPGFAKQKVFNPRIRVESLLVTPISKASXXXXXXXXXXTRPGKCFRLY 182
TSLTIDG+ +V+DPGF KQ F+P++ ++SL+VTPIS+A T PGKC+RLY
Sbjct: 790 TSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGRAGRTGPGKCYRLY 849
Query: 183 TEKGYNNEMHENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY 362
TE Y NEM + PEI R NL +L LK +GI+DL++FDFMDPP +T++ AL+ L
Sbjct: 850 TESAYRNEMLPSPIPEIQRQNLSHTILMLKAMGINDLLNFDFMDPPPAQTMIAALQNLYA 909
Query: 363 LAALDDDGNLTDLGSMMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVRPTE 542
L+ALDD+G LT LG MA+FP++PQL+K++I S + CS E+LSI AMLSVP + RP E
Sbjct: 910 LSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAMLSVPNIWSRpre 969
Query: 543 ARTAADEAKMGFAHIDGDHLTMLNVYHAFKQNREDSQWCYEHFVNYRSLKAADNVRIQLS 722
+ AD + FA+ + DHLT+LNVY +K NR WCYEH++ R ++ A++VR QL
Sbjct: 970 KQQEADRQRAQFANPESDHLTLLNVYTTWKMNRCSDNWCYEHYIQARGMRRAEDVRKQLI 1029
Query: 723 RIMDRFNLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLE-RSGHYLTVKDNQIVHLHPS 899
R+MDR+ R K I +AL SG+F VA + G Y T+ +N V++HPS
Sbjct: 1030 RLMDRY--RHPVVSCGRKREL--ILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPS 1085
Query: 900 TCL 908
L
Sbjct: 1086 GVL 1088
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,937,764
Number of Sequences: 369166
Number of extensions: 2385034
Number of successful extensions: 7464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7400
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9318621220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)