Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_G23
(853 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 492 e-139
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 490 e-138
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 490 e-138
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 490 e-138
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 489 e-138
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 489 e-138
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 489 e-138
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 487 e-137
sp|P02550|TBA_PIG Tubulin alpha chain 487 e-137
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 487 e-137
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 492 bits (1267), Expect = e-139
Identities = 237/241 (98%), Positives = 240/241 (99%)
Frame = +3
Query: 3 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNL 182
CAFMVDNEAIYDICRRNLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 183 VPYPRIHFPLATFAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 362
VPYPRIHFPLAT+APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 319
Query: 363 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 542
RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 543 NTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 722
NTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439
Query: 723 V 725
V
Sbjct: 440 V 440
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 490 bits (1262), Expect = e-138
Identities = 235/241 (97%), Positives = 240/241 (99%)
Frame = +3
Query: 3 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNL 182
CAFMVDNEAIYDICRRNLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 183 VPYPRIHFPLATFAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 362
VPYPRIHFPLAT+APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 363 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 542
RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 543 NTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 722
NTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
Query: 723 V 725
V
Sbjct: 440 V 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 490 bits (1262), Expect = e-138
Identities = 235/241 (97%), Positives = 240/241 (99%)
Frame = +3
Query: 3 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNL 182
CAFMVDNEAIYDICRRNLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 161 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 220
Query: 183 VPYPRIHFPLATFAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 362
VPYPRIHFPLAT+APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LY
Sbjct: 221 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLY 280
Query: 363 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 542
RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS
Sbjct: 281 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 340
Query: 543 NTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 722
NTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS
Sbjct: 341 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 400
Query: 723 V 725
V
Sbjct: 401 V 401
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 490 bits (1261), Expect = e-138
Identities = 235/241 (97%), Positives = 240/241 (99%)
Frame = +3
Query: 3 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNL 182
CAFMVDNEAIYDICRRNLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 183 VPYPRIHFPLATFAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 362
VPYPRIHFPLAT+APVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLY 319
Query: 363 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 542
RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 543 NTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 722
NTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439
Query: 723 V 725
V
Sbjct: 440 V 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 489 bits (1260), Expect = e-138
Identities = 235/241 (97%), Positives = 240/241 (99%)
Frame = +3
Query: 3 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNL 182
CAFMVDNEAIYDICRRNLDIERP+YTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 183 VPYPRIHFPLATFAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 362
VPYPRIHFPLAT+APVISAEKAYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLY 319
Query: 363 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 542
RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 543 NTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 722
NTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439
Query: 723 V 725
V
Sbjct: 440 V 440
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 489 bits (1258), Expect = e-138
Identities = 235/241 (97%), Positives = 238/241 (98%)
Frame = +3
Query: 3 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNL 182
CAFMVDNEAIYDICRRNLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 183 VPYPRIHFPLATFAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 362
VPYPRIHFPL T+APVISAEKAYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 319
Query: 363 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 542
RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 543 NTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 722
NTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439
Query: 723 V 725
V
Sbjct: 440 V 440
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 489 bits (1258), Expect = e-138
Identities = 235/240 (97%), Positives = 238/240 (99%)
Frame = +3
Query: 3 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNL 182
CAFMVDNEAIYDICRRNLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 183 VPYPRIHFPLATFAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 362
VPYPRIHFPL T+APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 319
Query: 363 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 542
RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 543 NTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 722
NTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 487 bits (1254), Expect = e-137
Identities = 233/240 (97%), Positives = 239/240 (99%)
Frame = +3
Query: 3 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNL 182
CAFMVDNEAIYDICRRNLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 183 VPYPRIHFPLATFAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 362
VPYPRIHFPLAT+APVISAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 363 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 542
RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 543 NTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 722
NTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 487 bits (1254), Expect = e-137
Identities = 233/241 (96%), Positives = 239/241 (99%)
Frame = +3
Query: 3 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNL 182
CAFMVDNEAIYDICRRNLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 183 VPYPRIHFPLATFAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 362
VPYPR HFPLAT+APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 363 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 542
RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+PPTVVPGGDLAKVQRAVCMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLS 379
Query: 543 NTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 722
NTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DS
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
Query: 723 V 725
V
Sbjct: 440 V 440
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 487 bits (1253), Expect = e-137
Identities = 233/240 (97%), Positives = 239/240 (99%)
Frame = +3
Query: 3 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNL 182
CAFMVDNEAIYDICRRNLDIERPTYTNLNRL+ QIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 183 VPYPRIHFPLATFAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 362
VPYPRIHFPLAT+APVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 363 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 542
RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 543 NTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 722
NTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVGADS
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADS 439
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,770,258
Number of Sequences: 369166
Number of extensions: 1619615
Number of successful extensions: 5091
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4846
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)