Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_G22
(620 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CPV7|ZDHC6_MOUSE Probable palmitoyltransferase ZDHHC6 ... 95 2e-19
sp|Q9H6R6|ZDHC6_HUMAN Probable palmitoyltransferase ZDHHC6 ... 91 2e-18
sp|Q98KH9|TYSY_RHILO Thymidylate synthase (TS) (TSase) 32 1.7
sp|P06163|RRPP_PI3B Phosphoprotein (P protein) 30 6.4
sp|Q5UYS2|IF2G_HALMA Translation initiation factor 2 gamma ... 30 6.4
sp|Q82S98|SSB_NITEU Single-strand binding protein (SSB) (He... 29 8.4
sp|Q72VS5|GATB_LEPIC Aspartyl/glutamyl-tRNA(Asn/Gln) amidot... 29 8.4
sp|Q8F9D9|GATB_LEPIN Aspartyl/glutamyl-tRNA(Asn/Gln) amidot... 29 8.4
>sp|Q9CPV7|ZDHC6_MOUSE Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6) (H4 homolog)
Length = 413
Score = 94.7 bits (234), Expect = 2e-19
Identities = 51/156 (32%), Positives = 78/156 (50%)
Frame = +1
Query: 7 GDGITWTVKDGCGQYDLTIEQIKQKRDKVLHSQNYEIRRSYNGGLFPVISFGCRVVYGSP 186
GDG+ W +++GC QY LTIEQ+KQK DK + S Y++ YNG P ++ G R + SP
Sbjct: 284 GDGLEWPIREGCDQYSLTIEQLKQKADKRVRSVRYKVIEDYNGACCP-LNRGVRTFFTSP 342
Query: 187 CTDENRLPVKPGQIVMVTRWRKHWLYGQILSVAASRSSHASISTEAVESSQQRRVATKRA 366
CT+E R+ ++ G+ ++ TR ++WLYG + + +E + +
Sbjct: 343 CTEEPRIRLQKGEFILATRGLRYWLYGDKI-----------LDDSFIEGT---------S 382
Query: 367 NSRGWFPAVCARQKYLGDEGGTAVPQKADRNGDSQP 474
RGWFP C +K +GDS P
Sbjct: 383 RVRGWFPRNCV--------------EKCPCDGDSDP 404
>sp|Q9H6R6|ZDHC6_HUMAN Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6) (Zinc finger
protein 376) (Transmembrane protein H4)
sp|Q5REH2|ZDHC6_PONPY Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6)
Length = 413
Score = 90.9 bits (224), Expect = 2e-18
Identities = 45/133 (33%), Positives = 71/133 (53%)
Frame = +1
Query: 7 GDGITWTVKDGCGQYDLTIEQIKQKRDKVLHSQNYEIRRSYNGGLFPVISFGCRVVYGSP 186
GDG+ W V++GC QY LTIEQ+KQK DK + S Y++ Y+G P ++ G + + SP
Sbjct: 284 GDGLEWPVREGCHQYSLTIEQLKQKADKRVRSVRYKVIEDYSGACCP-LNKGIKTFFTSP 342
Query: 187 CTDENRLPVKPGQIVMVTRWRKHWLYGQILSVAASRSSHASISTEAVESSQQRRVATKRA 366
CT+E R+ ++ G+ ++ TR ++WLYG + + +E +
Sbjct: 343 CTEEPRIQLQKGEFILATRGLRYWLYGDKI-----------LDDSFIEGV---------S 382
Query: 367 NSRGWFPAVCARQ 405
RGWFP C +
Sbjct: 383 RIRGWFPRKCVEK 395
>sp|Q98KH9|TYSY_RHILO Thymidylate synthase (TS) (TSase)
Length = 264
Score = 31.6 bits (70), Expect = 1.7
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Frame = +1
Query: 259 LYGQILSVAASRSSHASISTEAVESSQQRR--------VATKRANSRG------WFPAVC 396
L +L A RS T +V Q R TK+ + + WF A
Sbjct: 7 LLQHVLDNGADRSDRTGTGTRSVFGYQMRFDLARGFPVTTTKKLHLKSIIHELLWFLAGD 66
Query: 397 ARQKYLGDEGGTAVPQKADRNGDSQPNSSRHAKS 498
KYL D G T + AD NGD P R +S
Sbjct: 67 TNIKYLTDHGVTIWDEWADENGDLGPVYGRQWRS 100
>sp|P06163|RRPP_PI3B Phosphoprotein (P protein)
Length = 596
Score = 29.6 bits (65), Expect = 6.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 327 RILSATARSNEESQQSRMVPSRVRSTEISXXXXXNGGPPEGRSKR*FSTE 476
+I S RSN+ES +R+VP R +T S N R+K+ + E
Sbjct: 523 QIKSDINRSNDESNATRLVPKRTSNTMRSLIIIINNSNLSSRAKQSYINE 572
>sp|Q5UYS2|IF2G_HALMA Translation initiation factor 2 gamma subunit (eIF-2-gamma)
(aIF2-gamma)
Length = 409
Score = 29.6 bits (65), Expect = 6.4
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +3
Query: 6 GGRDNVDREGRLRPIRPYNRANQTETRQ-SSPFTELRNQAELQRWIVPGDLVRVPRGVRF 182
GG+ + D E LRP R +TE + ++ L++ + + PG L+ V G+
Sbjct: 241 GGQLDADDEIELRPGREVEEGGKTEWQPVTTTVRSLQSGGDFVDTVTPGGLLGVGTGLDP 300
Query: 183 PLHRREQIAGE-TGPNRHGNAMEEALAVRADLV 278
+ + + +AG+ GP + E + DL+
Sbjct: 301 AITKGDALAGQVAGPPGSLPPVHETFTMDVDLL 333
>sp|Q82S98|SSB_NITEU Single-strand binding protein (SSB) (Helix-destabilizing protein)
Length = 149
Score = 29.3 bits (64), Expect = 8.4
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +1
Query: 214 KPGQIVMVTRWRKHWLYGQILSVAASRSSHASISTEAVESSQQRRVATKRANSRGWFPAV 393
K G+ T W + ++G+ +A S +E Q R T ++N + +
Sbjct: 42 KGGEKQERTEWHRVVMFGKQAEIAGEYLKKGS--QIYIEGRLQTRKWTDKSNVERYTTEI 99
Query: 394 CARQKYL--GDEGGTAVPQKADRNGDSQPNSSRHAKSD 501
A + + G GG + ADR+ D Q S+ AKS+
Sbjct: 100 VADRMQMLGGRSGGGSYDPPADRDHDYQSQSTPPAKSN 137
>sp|Q72VS5|GATB_LEPIC Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
(Asp/Glu-ADT subunit B)
Length = 486
Score = 29.3 bits (64), Expect = 8.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 1 CRGDGITWTVK--DGCGQYDLTIEQIKQKRDKVLHSQNYEIRRSY 129
C G G+T+T+K D LT +++ K++HS + I +SY
Sbjct: 101 CTGGGVTFTIKGEDSARYVRLTRIHLEEDAGKLIHSADPNIPQSY 145
>sp|Q8F9D9|GATB_LEPIN Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
(Asp/Glu-ADT subunit B)
Length = 486
Score = 29.3 bits (64), Expect = 8.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 1 CRGDGITWTVK--DGCGQYDLTIEQIKQKRDKVLHSQNYEIRRSY 129
C G G+T+T+K D LT +++ K++HS + I +SY
Sbjct: 101 CTGGGVTFTIKGEDSARYVRLTRIHLEEDAGKLIHSADPNIPQSY 145
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,980,853
Number of Sequences: 369166
Number of extensions: 1497132
Number of successful extensions: 4466
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4462
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)