Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_G11
(893 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O13124|VDR_XENLA Vitamin D3 receptor (VDR) (1,25-dihydro... 33 0.82
sp|P61708|SYA_TREDE Alanyl-tRNA synthetase (Alanine--tRNA l... 32 1.8
sp|Q9BVV6|K0586_HUMAN Protein KIAA0586 30 9.1
>sp|O13124|VDR_XENLA Vitamin D3 receptor (VDR) (1,25-dihydroxyvitamin D3 receptor)
Length = 422
Score = 33.5 bits (75), Expect = 0.82
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Frame = +3
Query: 342 SMKRKFENIVEGFNTCTLGIECLVPDDDYPHAENCIYYR-EDFLVSKENVTEDKYFGLLR 518
SMKRK TC +C + D+ H ++C R D + KE + D+ R
Sbjct: 52 SMKRK------AMFTCPFNGDCRITKDNRRHCQSCRLKRCVDIGMMKEFILTDEEVQRKR 105
Query: 519 FKLNVFHGDE---EATRVEESSNKNDVKRVV------NYPPEIIDFNEFETPVKSNMLPY 671
+N +E E+ R + S + + ++ + DFN+F PV+ N+ P+
Sbjct: 106 QMINKRKSEEALKESMRPKISDEQQKMIDILLEAHRKTFDTTYSDFNKFRPPVRENVDPF 165
>sp|P61708|SYA_TREDE Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 600
Score = 32.3 bits (72), Expect = 1.8
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +3
Query: 450 YYREDFLVSKENVTEDKYFGLLRFKLN--VFHGDEEATRVEESSN 578
+ +E S E +T++KY G+ KL+ VF G+E+A R EES++
Sbjct: 100 FKKESIAYSFEFLTDEKYLGIPIDKLSFTVFEGNEDAPRDEESAS 144
>sp|Q9BVV6|K0586_HUMAN Protein KIAA0586
Length = 1533
Score = 30.0 bits (66), Expect = 9.1
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 456 REDFLVSKENVTEDKYFGLLRFKLNVFHGDEEATRVEESSNKNDVKR-VVNYPPE 617
RE+ L KEN+ + G +R + + ++ TR ESSN + R + + PE
Sbjct: 345 RENLLEEKENMEVSCHRGNVRLLEQILNNNDSLTRKSESSNTTSLTRSKIGWTPE 399
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,805,271
Number of Sequences: 369166
Number of extensions: 1805070
Number of successful extensions: 3944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3943
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)