Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_G08-2
(375 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 (AtOPT1) 32 0.59
sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 (AtOPT5) 32 0.59
sp|Q95BX6|MATK_ULMPA Maturase K (Intron maturase) 28 5.0
sp|Q5SZK8|FREM2_HUMAN FRAS1-related extracellular matrix pr... 28 6.5
sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 pr... 28 6.5
sp|Q8L9A9|XTH8_ARATH Probable xyloglucan endotransglucosyla... 28 8.5
>sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 (AtOPT1)
Length = 755
Score = 31.6 bits (70), Expect = 0.59
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 249 FIGDCRIGHFLKII*RNMFIIWL 317
F+GD ++GH++KI R+MFI+ L
Sbjct: 528 FVGDFKLGHYMKIPPRSMFIVQL 550
>sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 (AtOPT5)
Length = 753
Score = 31.6 bits (70), Expect = 0.59
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 249 FIGDCRIGHFLKII*RNMFIIWL 317
F+GD ++GH++KI R+MFI+ L
Sbjct: 526 FVGDFKLGHYMKIPPRSMFIVQL 548
>sp|Q95BX6|MATK_ULMPA Maturase K (Intron maturase)
Length = 505
Score = 28.5 bits (62), Expect = 5.0
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Frame = -3
Query: 286 ILRKWPMRQSPMKMCKL----RWNWSRSVVSNFIIPVFVKS----LVFKHRSNKTHTIVL 131
ILR W S + + +L +NW+ ++SN I +F KS +F + S H
Sbjct: 162 ILRYWVKDASSLHLLRLFLHDYYNWNSLIISNKSISIFFKSNSRFFLFLYNS---HVCEY 218
Query: 130 NNGNLFFEHMKCFN*LKSSKF*MKFRYIY 44
+ LF + C L SS + Y Y
Sbjct: 219 ESILLFIRNQSCHLRLTSSGSFFERIYFY 247
>sp|Q5SZK8|FREM2_HUMAN FRAS1-related extracellular matrix protein 2 precursor (ECM3
homolog)
Length = 3169
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 191 WYDKVGHYTPGPVPSQFTHFHWRLSHRPFSQDYLEKHV 304
+Y G ++PGPV QFT F + +H P +Q L++ V
Sbjct: 654 FYRHSGPHSPGPVTDQFT-FRVQDNHDPPNQSGLQRFV 690
>sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 precursor
Length = 4010
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 191 WYDKVGHYTPGPVPSQFTHFHWRLSHRPFSQDYLEKHVHNLA 316
WY +G P+Q F +++S +Q++LE H+ N+A
Sbjct: 1422 WYRHLG------APTQSDSFRFQVSSATSAQEHLESHMFNIA 1457
>sp|Q8L9A9|XTH8_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 8
precursor (At-XTH8) (XTH-8)
Length = 292
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 13 DKLDIEFGTRDKCT*ISSKIWNFSIS*NTSCVQKTNYRYSIQWY 144
D +I + T +IWN S+ +T C +T + Y W+
Sbjct: 27 DNFNIMWSENHFTTSDDGEIWNLSLDNDTGCGFQTKHMYRFGWF 70
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,299,854
Number of Sequences: 369166
Number of extensions: 899878
Number of successful extensions: 2173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2173
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)