Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_G07
(834 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 436 e-122
sp|P09645|TBA8_CHICK Tubulin alpha-8 chain 436 e-122
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 435 e-122
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 435 e-122
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 434 e-121
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 434 e-121
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 434 e-121
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 434 e-121
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 434 e-121
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 434 e-121
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 436 bits (1122), Expect = e-122
Identities = 210/216 (97%), Positives = 214/216 (99%)
Frame = +3
Query: 3 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 182
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Query: 183 SAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIASIK 362
SAEKAYHEQLSV+EITNACFEP NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA+IK
Sbjct: 277 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 336
Query: 363 TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLSNTTAIAEAWARLDHKFD 542
TKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLSNTTAIAEAWARLDHKFD
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD 396
Query: 543 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 650
LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 397 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>sp|P09645|TBA8_CHICK Tubulin alpha-8 chain
Length = 324
Score = 436 bits (1120), Expect = e-122
Identities = 208/216 (96%), Positives = 214/216 (99%)
Frame = +3
Query: 3 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 182
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P+I
Sbjct: 92 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYSPII 151
Query: 183 SAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIASIK 362
SAEKAYHEQLSVSEITNACFEP+NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA+IK
Sbjct: 152 SAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAAIK 211
Query: 363 TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLSNTTAIAEAWARLDHKFD 542
TKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLSNTTAIAEAWARLDHKFD
Sbjct: 212 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD 271
Query: 543 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 650
LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 272 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 307
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 435 bits (1119), Expect = e-122
Identities = 209/216 (96%), Positives = 214/216 (99%)
Frame = +3
Query: 3 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 182
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Query: 183 SAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIASIK 362
SAEKAYHEQL+VSEITNACFEP NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIA+IK
Sbjct: 277 SAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIK 336
Query: 363 TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLSNTTAIAEAWARLDHKFD 542
TKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLSNTTAIAEAWARLDHKFD
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD 396
Query: 543 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 650
LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 397 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 435 bits (1118), Expect = e-122
Identities = 209/216 (96%), Positives = 213/216 (98%)
Frame = +3
Query: 3 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 182
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 276
Query: 183 SAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIASIK 362
SAEKAYHEQLSV+EITNACFEP NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA+IK
Sbjct: 277 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 336
Query: 363 TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLSNTTAIAEAWARLDHKFD 542
TKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLSNTTAIAEAWARLDHKFD
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD 396
Query: 543 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 650
LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 397 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 434 bits (1117), Expect = e-121
Identities = 209/216 (96%), Positives = 213/216 (98%)
Frame = +3
Query: 3 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 182
LDIERPTYTNLNRLI QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 217 LDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Query: 183 SAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIASIK 362
SAEKAYHEQLSVSEITNACFEP NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIA+IK
Sbjct: 277 SAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIK 336
Query: 363 TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLSNTTAIAEAWARLDHKFD 542
TKRSIQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLSNTTAIAEAWARLDHKFD
Sbjct: 337 TKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD 396
Query: 543 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 650
LMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct: 397 LMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 434 bits (1117), Expect = e-121
Identities = 208/216 (96%), Positives = 214/216 (99%)
Frame = +3
Query: 3 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 182
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Query: 183 SAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIASIK 362
SAEKAYHEQLSV+EITNACFEP NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIA+IK
Sbjct: 277 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIK 336
Query: 363 TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLSNTTAIAEAWARLDHKFD 542
TKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLSNTTAIAEAWARLDHKFD
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD 396
Query: 543 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 650
LMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct: 397 LMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 434 bits (1117), Expect = e-121
Identities = 208/216 (96%), Positives = 214/216 (99%)
Frame = +3
Query: 3 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 182
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 178 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 237
Query: 183 SAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIASIK 362
SAEKAYHEQLSV+EITNACFEP NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIA+IK
Sbjct: 238 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIK 297
Query: 363 TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLSNTTAIAEAWARLDHKFD 542
TKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLSNTTAIAEAWARLDHKFD
Sbjct: 298 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD 357
Query: 543 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 650
LMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct: 358 LMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 393
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 434 bits (1117), Expect = e-121
Identities = 209/216 (96%), Positives = 213/216 (98%)
Frame = +3
Query: 3 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 182
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 276
Query: 183 SAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIASIK 362
SAEKAYHEQLSVSEITNACFEP NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIA+IK
Sbjct: 277 SAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIK 336
Query: 363 TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLSNTTAIAEAWARLDHKFD 542
TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKV RA+CMLSNTTAIAEAWARLDHKFD
Sbjct: 337 TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFD 396
Query: 543 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 650
LMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEKDY
Sbjct: 397 LMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDY 432
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 434 bits (1116), Expect = e-121
Identities = 208/216 (96%), Positives = 214/216 (99%)
Frame = +3
Query: 3 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 182
LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 217 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Query: 183 SAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIASIK 362
SAEKAYHEQL+V+EITNACFEP NQMVKCDPRHGKYM+CCMLYRGDVVPKDVNAAIA+IK
Sbjct: 277 SAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIK 336
Query: 363 TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLSNTTAIAEAWARLDHKFD 542
TKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLSNTTAIAEAWARLDHKFD
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD 396
Query: 543 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 650
LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 397 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 434 bits (1115), Expect = e-121
Identities = 208/216 (96%), Positives = 214/216 (99%)
Frame = +3
Query: 3 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 182
LDIERP+YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
Sbjct: 217 LDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Query: 183 SAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIASIK 362
SAEKAYHEQLSV+EITNACFEP NQ+VKCDPRHGKYMACCMLYRGDVVPKDVNAAIA+IK
Sbjct: 277 SAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 336
Query: 363 TKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLSNTTAIAEAWARLDHKFD 542
TKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLSNTTAIAEAWARLDHKFD
Sbjct: 337 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD 396
Query: 543 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 650
LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 397 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,363,134
Number of Sequences: 369166
Number of extensions: 1826633
Number of successful extensions: 5158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4914
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)