Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_F09
(560 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (... 94 2e-19
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (... 94 2e-19
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Ra... 94 2e-19
sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (... 94 2e-19
sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (... 94 3e-19
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (... 94 3e-19
sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (... 93 5e-19
sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab... 89 1e-17
sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (R... 89 1e-17
sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta (Rab... 87 3e-17
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 94.4 bits (233), Expect = 2e-19
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = +3
Query: 3 PGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGS 182
P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS
Sbjct: 368 PALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGS 427
Query: 183 EFDFGKVQSK 212
FDF ++ K
Sbjct: 428 AFDFENMKRK 437
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
GDI)
Length = 447
Score = 94.4 bits (233), Expect = 2e-19
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = +3
Query: 3 PGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGS 182
P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS
Sbjct: 368 PALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGS 427
Query: 183 EFDFGKVQSK 212
FDF ++ K
Sbjct: 428 AFDFENMKRK 437
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 94.4 bits (233), Expect = 2e-19
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = +3
Query: 3 PGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGS 182
P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS
Sbjct: 368 PALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGS 427
Query: 183 EFDFGKVQSK 212
FDF ++ K
Sbjct: 428 AFDFENMKRK 437
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 94.4 bits (233), Expect = 2e-19
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = +3
Query: 3 PGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGS 182
P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS
Sbjct: 368 PALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGS 427
Query: 183 EFDFGKVQSK 212
FDF ++ K
Sbjct: 428 AFDFENMKRK 437
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4)
(Oligophrenin-2)
Length = 447
Score = 93.6 bits (231), Expect = 3e-19
Identities = 44/70 (62%), Positives = 51/70 (72%)
Frame = +3
Query: 3 PGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGS 182
P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G+
Sbjct: 368 PALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGT 427
Query: 183 EFDFGKVQSK 212
FDF ++ K
Sbjct: 428 AFDFENMKRK 437
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 93.6 bits (231), Expect = 3e-19
Identities = 44/70 (62%), Positives = 51/70 (72%)
Frame = +3
Query: 3 PGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGS 182
P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G+
Sbjct: 368 PALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGT 427
Query: 183 EFDFGKVQSK 212
FDF ++ K
Sbjct: 428 AFDFENMKRK 437
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 92.8 bits (229), Expect = 5e-19
Identities = 44/70 (62%), Positives = 50/70 (71%)
Frame = +3
Query: 3 PGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGS 182
P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G
Sbjct: 368 PALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGM 427
Query: 183 EFDFGKVQSK 212
FDF ++ K
Sbjct: 428 AFDFENMKRK 437
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 88.6 bits (218), Expect = 1e-17
Identities = 41/70 (58%), Positives = 53/70 (75%)
Frame = +3
Query: 3 PGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGS 182
P L LL IEQ F + SDL+ P D G +S++F+S +YDATTHFETTC D+ D+YKR TGS
Sbjct: 368 PALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTGS 427
Query: 183 EFDFGKVQSK 212
EFDF +++ K
Sbjct: 428 EFDFEEMKRK 437
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 88.6 bits (218), Expect = 1e-17
Identities = 41/70 (58%), Positives = 53/70 (75%)
Frame = +3
Query: 3 PGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGS 182
P L LL IEQ F + SDL+ P D G +S++F+S +YDATTHFETTC D+ D+YKR TGS
Sbjct: 368 PALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTGS 427
Query: 183 EFDFGKVQSK 212
EFDF +++ K
Sbjct: 428 EFDFEEMKRK 437
>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 87.0 bits (214), Expect = 3e-17
Identities = 41/70 (58%), Positives = 52/70 (74%)
Frame = +3
Query: 3 PGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGS 182
P L LL IEQ F + SDL P D G +S++F+S +YDATTHFETTC D+ D+YKR TGS
Sbjct: 368 PALELLKPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCGDIKDIYKRMTGS 427
Query: 183 EFDFGKVQSK 212
EFDF +++ K
Sbjct: 428 EFDFEEMKRK 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,177,592
Number of Sequences: 369166
Number of extensions: 1134121
Number of successful extensions: 3208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3205
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)