Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_F07
(423 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17934|PA24_BUNMU Phospholipase A2, beta bungarotoxin A4... 30 2.7
sp|Q12986|NFX1_HUMAN Transcriptional repressor NF-X1 (Nucle... 29 3.5
sp|P16869|FHUE_ECOLI FhuE receptor precursor (Outer-membran... 29 4.6
sp|Q9XTB2|GPA13_CAEEL Guanine nucleotide-binding protein al... 28 6.0
sp|P40969|CBF3B_YEAST Centromere DNA-binding protein comple... 28 7.9
>sp|P17934|PA24_BUNMU Phospholipase A2, beta bungarotoxin A4 chain precursor
(Phosphatidylcholine 2-acylhydrolase)
Length = 147
Score = 29.6 bits (65), Expect = 2.7
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 205 PPRNLDLFHFQNLLQKPEPCSVCFGTMSDTYIKMAGRDCMSCGRTIMDKECSSFINC 375
PP++LDL+ F+ +++ PC +G +D Y G +D+ C NC
Sbjct: 23 PPQHLDLYQFKEMIRYTIPCEKTWGEYAD-YGCYCGAGGSGTPIDALDRCCYVHDNC 78
>sp|Q12986|NFX1_HUMAN Transcriptional repressor NF-X1 (Nuclear transcription factor, X
box-binding, 1)
Length = 1104
Score = 29.3 bits (64), Expect = 3.5
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +1
Query: 220 DLFHFQNLLQKPEPCSVCFGTMSDTYIKMAGRDCMSCGRTI---MDKECSSFINC 375
D H NLL P PC C M+ T R + CG+ + C + +NC
Sbjct: 436 DCPHSCNLLCHPGPCPPCPAFMTKTCECGRTRHTVRCGQAVSVHCSNPCENILNC 490
>sp|P16869|FHUE_ECOLI FhuE receptor precursor (Outer-membrane receptor for
Fe(III)-coprogen, Fe(III)-ferrioxamine B and
Fe(III)-rhodotrulic acid)
Length = 729
Score = 28.9 bits (63), Expect = 4.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 76 SNSYDRLRASKPMTTYADSAVNALMM 153
SNSYDR R++ P Y D +N + M
Sbjct: 287 SNSYDRARSTAPDWAYNDKEINKVFM 312
>sp|Q9XTB2|GPA13_CAEEL Guanine nucleotide-binding protein alpha-13 subunit
Length = 348
Score = 28.5 bits (62), Expect = 6.0
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 43 EAVDSCHFCPDSNSYDRLRASKPMTTYADSAVNALMMPYNAPLMQNVLNYRALNPPRNLD 222
E +D+ FC + YD++ + +T D A+N L P Y LN +D
Sbjct: 217 EGIDAIFFCIAISEYDQVMSEDMVTNRLDDALNLLQSISEDPAFATTPIYLFLN---EID 273
Query: 223 LF 228
+F
Sbjct: 274 VF 275
>sp|P40969|CBF3B_YEAST Centromere DNA-binding protein complex CBF3 subunit B (Centromere
protein 3)
Length = 608
Score = 28.1 bits (61), Expect = 7.9
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 154 PYNAPLMQNVLNYRALNPPRNLDLFHFQNLLQKPEPCSVCFGTMSDTYIKMAGRDCMSCG 333
PY+ PL+ N L + ++ +N + F+ LL S+ T+ + ++ G D + G
Sbjct: 246 PYDEPLLANSLLTQCIHTFKNFHVDDFRPLLNDDPVESIAKVTLGRIFYRLCGCDYLQSG 305
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,750,496
Number of Sequences: 369166
Number of extensions: 915483
Number of successful extensions: 2256
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2256
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)