Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_F03
(251 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BPU6|DPYL5_HUMAN Dihydropyrimidinase-related protein 5... 44 9e-05
sp|Q14194|DPYL1_HUMAN Dihydropyrimidinase-related protein 1... 44 9e-05
sp|Q9EQF6|DPYL5_MOUSE Dihydropyrimidinase-related protein 5... 44 9e-05
sp|P97427|DPYL1_MOUSE Dihydropyrimidinase-related protein 1... 44 9e-05
sp|Q9JHU0|DPYL5_RAT Dihydropyrimidinase-related protein 5 (... 44 9e-05
sp|Q62950|DPYL1_RAT Dihydropyrimidinase-related protein 1 (... 44 9e-05
sp|P47942|DPYL2_RAT Dihydropyrimidinase-related protein 2 (... 40 0.002
sp|Q16555|DPYL2_HUMAN Dihydropyrimidinase-related protein 2... 40 0.002
sp|O08553|DPYL2_MOUSE Dihydropyrimidinase-related protein 2... 40 0.002
sp|Q90635|DPYL2_CHICK Dihydropyrimidinase-related protein 2... 40 0.002
>sp|Q9BPU6|DPYL5_HUMAN Dihydropyrimidinase-related protein 5 (DRP-5) (ULIP6 protein)
(Collapsin response mediator protein 5) (CRMP-5)
(CRMP3-associated molecule) (CRAM)
Length = 564
Score = 44.3 bits (103), Expect = 9e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +3
Query: 3 DSSFALSGAQIDDNRPARSGIRTHQPPGGNTTSLW 107
+SSF+LSG+QIDD+ P R+ R PPGG ++ +W
Sbjct: 530 ESSFSLSGSQIDDHVPKRASARILAPPGGRSSGIW 564
>sp|Q14194|DPYL1_HUMAN Dihydropyrimidinase-related protein 1 (DRP-1) (Collapsin response
mediator protein 1) (CRMP-1)
Length = 572
Score = 44.3 bits (103), Expect = 9e-05
Identities = 23/35 (65%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Frame = +3
Query: 6 SSFALSGAQIDDNRPARSGIRTHQPPGG--NTTSL 104
S+F+LSGAQIDDN P R+G R PPGG N TSL
Sbjct: 537 SNFSLSGAQIDDNNPRRTGHRIVAPPGGRSNITSL 571
>sp|Q9EQF6|DPYL5_MOUSE Dihydropyrimidinase-related protein 5 (DRP-5) (Collapsin response
mediator protein 5) (CRMP-5)
Length = 564
Score = 44.3 bits (103), Expect = 9e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +3
Query: 3 DSSFALSGAQIDDNRPARSGIRTHQPPGGNTTSLW 107
+SSF+LSG+QIDD+ P R+ R PPGG ++ +W
Sbjct: 530 ESSFSLSGSQIDDHVPKRASARILAPPGGRSSGIW 564
>sp|P97427|DPYL1_MOUSE Dihydropyrimidinase-related protein 1 (DRP-1) (Collapsin response
mediator protein 1) (CRMP-1) (ULIP3 protein)
Length = 572
Score = 44.3 bits (103), Expect = 9e-05
Identities = 23/35 (65%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Frame = +3
Query: 6 SSFALSGAQIDDNRPARSGIRTHQPPGG--NTTSL 104
S+F+LSGAQIDDN P R+G R PPGG N TSL
Sbjct: 537 SNFSLSGAQIDDNNPRRTGHRIVAPPGGRSNITSL 571
>sp|Q9JHU0|DPYL5_RAT Dihydropyrimidinase-related protein 5 (DRP-5) (ULIP6 protein)
Length = 564
Score = 44.3 bits (103), Expect = 9e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +3
Query: 3 DSSFALSGAQIDDNRPARSGIRTHQPPGGNTTSLW 107
+SSF+LSG+QIDD+ P R+ R PPGG ++ +W
Sbjct: 530 ESSFSLSGSQIDDHVPKRASARILAPPGGRSSGIW 564
>sp|Q62950|DPYL1_RAT Dihydropyrimidinase-related protein 1 (DRP-1) (Collapsin response
mediator protein 1) (CRMP-1)
Length = 572
Score = 44.3 bits (103), Expect = 9e-05
Identities = 23/35 (65%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Frame = +3
Query: 6 SSFALSGAQIDDNRPARSGIRTHQPPGG--NTTSL 104
S+F+LSGAQIDDN P R+G R PPGG N TSL
Sbjct: 537 SNFSLSGAQIDDNNPRRTGHRIVAPPGGRSNITSL 571
>sp|P47942|DPYL2_RAT Dihydropyrimidinase-related protein 2 (DRP-2) (Turned on after
division, 64 kDa protein) (TOAD-64) (Collapsin response
mediator protein 2) (CRMP-2)
Length = 572
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +3
Query: 6 SSFALSGAQIDDNRPARSGIRTHQPPGG--NTTSL 104
S F+LSGAQIDDN P R+ R PPGG N TSL
Sbjct: 537 SGFSLSGAQIDDNIPRRTTQRIVAPPGGRANITSL 571
>sp|Q16555|DPYL2_HUMAN Dihydropyrimidinase-related protein 2 (DRP-2) (Collapsin response
mediator protein 2) (CRMP-2) (N2A3)
Length = 572
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +3
Query: 6 SSFALSGAQIDDNRPARSGIRTHQPPGG--NTTSL 104
S F+LSGAQIDDN P R+ R PPGG N TSL
Sbjct: 537 SGFSLSGAQIDDNIPRRTTQRIVAPPGGRANITSL 571
>sp|O08553|DPYL2_MOUSE Dihydropyrimidinase-related protein 2 (DRP-2) (ULIP 2 protein)
Length = 572
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +3
Query: 6 SSFALSGAQIDDNRPARSGIRTHQPPGG--NTTSL 104
S F+LSGAQIDDN P R+ R PPGG N TSL
Sbjct: 537 SGFSLSGAQIDDNIPRRTTQRIVAPPGGRANITSL 571
>sp|Q90635|DPYL2_CHICK Dihydropyrimidinase-related protein 2 (DRP-2) (Collapsin response
mediator protein CRMP-62)
Length = 572
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +3
Query: 6 SSFALSGAQIDDNRPARSGIRTHQPPGG--NTTSL 104
S F+LSGAQIDDN P R+ R PPGG N TSL
Sbjct: 537 SGFSLSGAQIDDNIPRRTTQRIVAPPGGRANITSL 571
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,377,191
Number of Sequences: 369166
Number of extensions: 548072
Number of successful extensions: 1156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)