Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_F02
(921 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04820|MDHC_ECHGR Malate dehydrogenase, cytoplasmic 353 4e-97
sp|P11708|MDHC_PIG Malate dehydrogenase, cytoplasmic 342 7e-94
sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic 340 4e-93
sp|P14152|MDHC_MOUSE Malate dehydrogenase, cytoplasmic 337 3e-92
sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic 309 8e-84
sp|P57106|MDHD_ARATH Malate dehydrogenase, cytoplasmic 2 307 3e-83
sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 306 4e-83
sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic 305 2e-82
sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic 303 4e-82
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic 302 1e-81
>sp|Q04820|MDHC_ECHGR Malate dehydrogenase, cytoplasmic
Length = 332
Score = 353 bits (906), Expect = 4e-97
Identities = 182/300 (60%), Positives = 217/300 (72%), Gaps = 3/300 (1%)
Frame = +3
Query: 9 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 188
P+ V++TGAAGQI Y L + VA+GN+FG+ Q I LHLLDIP+ L+G++MEL+DCAF
Sbjct: 4 PLRVLITGAAGQIAYNLSNMVANGNLFGKDQQIILHLLDIPEAKTVLDGVVMELQDCAFT 63
Query: 189 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 368
L + T L+EAF D+D ALMVGAMPRK+GMER+DLL +NV IFK QGEALDKYAKKT
Sbjct: 64 VLAGIVPTHCLKEAFTDIDVALMVGAMPRKQGMERRDLLSSNVKIFKEQGEALDKYAKKT 123
Query: 369 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 548
V+V VVGNPANTNCLIMSKYAPSIPKENF+ALTRLDHNRAI Q+A KAGVP V+ I
Sbjct: 124 VKVLVVGNPANTNCLIMSKYAPSIPKENFTALTRLDHNRAIYQVAAKAGVPNTCVKNVCI 183
Query: 549 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 728
WGNHSN Q+PD H +V DGK+ + + DE W+K F+ VQ RGAAVI
Sbjct: 184 WGNHSNKQFPDLSHAVVT-KDGKQHPAKELINDEKWVKEVFIPCVQNRGAAVIGLRKLSR 242
Query: 729 XXXXXXXXXDHCRDWFHGTK--EWVSMAVYSDGS-YGVPKDVIFSFPVTIEHGKWHIVQG 899
D RDW+ GTK EWVSM+VYS G YG PKD+ FSFPVTI+ G + +V G
Sbjct: 243 AASAAKAIVDQMRDWWFGTKEGEWVSMSVYSTGDHYGAPKDIYFSFPVTIKDGHYKVVDG 302
>sp|P11708|MDHC_PIG Malate dehydrogenase, cytoplasmic
Length = 334
Score = 342 bits (878), Expect = 7e-94
Identities = 182/300 (60%), Positives = 220/300 (73%), Gaps = 3/300 (1%)
Frame = +3
Query: 9 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 188
PI V++TGAAGQI Y L++S+ +G+VFG+ QPI L LLDI M+ L+G++MEL+DCA P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 189 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 368
L V AT + AF D+D A++VG+MPR++GMERKDLLKANV IFK QG ALDKYAKK+
Sbjct: 64 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 369 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 548
V+V VVGNPANTNCL SK APSIPKENFS LTRLDHNRA AQIA K GV D V+ II
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 549 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 728
WGNHS+TQYPD +H VK KEV V +AVKD++WLK +F+ TVQ RGAAVI
Sbjct: 184 WGNHSSTQYPDVNHAKVK-LQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 729 XXXXXXXXXDHCRDWFHGTK--EWVSMAVYSDG-SYGVPKDVIFSFPVTIEHGKWHIVQG 899
DH RD + GT E+VSM + SDG SYGVP D+++SFPVTI+ W IV+G
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 302
>sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic
Length = 334
Score = 340 bits (871), Expect = 4e-93
Identities = 181/300 (60%), Positives = 219/300 (73%), Gaps = 3/300 (1%)
Frame = +3
Query: 9 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 188
PI V++TGAAGQI Y L++S+ +G+VFG+ QPI L LLDI M+ L+G++MEL+DCA P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 189 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 368
L V AT AF D+D A++VG+MPR+EGMERKDLLKANV IFK QG ALDKYAKK+
Sbjct: 64 LLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKS 123
Query: 369 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 548
V+V VVGNPANTNCL SK APSIPKENFS LTRLDHNRA AQIA K GV + V+ II
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVII 183
Query: 549 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 728
WGNHS+TQYPD +H VK GKEV V +A+KD++WLK +F+ TVQ RGAAVI
Sbjct: 184 WGNHSSTQYPDVNHAKVK-LQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSS 242
Query: 729 XXXXXXXXXDHCRDWFHGTK--EWVSMAVYSDG-SYGVPKDVIFSFPVTIEHGKWHIVQG 899
DH RD + GT E+VSM V SDG SYGVP D+++SFPV I++ W V+G
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEG 302
>sp|P14152|MDHC_MOUSE Malate dehydrogenase, cytoplasmic
Length = 334
Score = 337 bits (864), Expect = 3e-92
Identities = 179/300 (59%), Positives = 219/300 (73%), Gaps = 3/300 (1%)
Frame = +3
Query: 9 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 188
PI V++TGAAGQI Y L++S+ +G+VFG+ QPI L LLDI M+ L+G++MEL+DCA P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 189 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 368
L V AT + AF D+D A++VG+MPR+EGMERKDLLKANV IFK QG AL+KYAKK+
Sbjct: 64 LLQDVIATDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGTALEKYAKKS 123
Query: 369 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 548
V+V VVGNPANTNCL SK APSIPKENFS LTRLDHNRA +QIA K GV D V+ II
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVII 183
Query: 549 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 728
WGNHS+TQYPD +H VK GKEV V +A+KD++WLK +F+ TVQ RGAAVI
Sbjct: 184 WGNHSSTQYPDVNHAKVK-LQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 729 XXXXXXXXXDHCRDWFHGTK--EWVSMAVYSDG-SYGVPKDVIFSFPVTIEHGKWHIVQG 899
DH RD + GT E+VSM V SDG SYGVP D+++S PV I++ W V+G
Sbjct: 243 AMSAAKAIADHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSLPVVIKNKTWKFVEG 302
>sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic
Length = 332
Score = 309 bits (791), Expect = 8e-84
Identities = 157/299 (52%), Positives = 199/299 (66%), Gaps = 2/299 (0%)
Frame = +3
Query: 9 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 188
P+ V++TGAAGQIGY LV +A G + G +QP+ LH+LDIP +LNG+ MEL D AFP
Sbjct: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGANQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
Query: 189 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 368
L V AT D EA V+ A+MVG PRKEGMERKD++ NV+I+K Q AL+++A
Sbjct: 65 LLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
Query: 369 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 548
+V VV NPANTN LI+ ++APSIP++N S LTRLDHNRA+ QI+ + V V+ II
Sbjct: 125 CKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVKNVII 184
Query: 549 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 728
WGNHS+TQYPD +H VK G + V + V D+ WL +F+ TVQ RGAA+I
Sbjct: 185 WGNHSSTQYPDVNHATVK-TQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSS 243
Query: 729 XXXXXXXXXDHCRDWFHGTKE--WVSMAVYSDGSYGVPKDVIFSFPVTIEHGKWHIVQG 899
DH DW GT E WVSM VYSDGSY VP +I+SFPVT ++G+W IVQG
Sbjct: 244 ALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIVQG 302
>sp|P57106|MDHD_ARATH Malate dehydrogenase, cytoplasmic 2
Length = 332
Score = 307 bits (786), Expect = 3e-83
Identities = 158/299 (52%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Frame = +3
Query: 9 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 188
P+ V++TGAAGQIGY LV +A G + G QP+ LH+LDIP +LNG+ MEL D AFP
Sbjct: 5 PVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVDAAFP 64
Query: 189 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 368
L V AT D EA V+ A+MVG PRKEGMERKD++ NV+I+K Q AL+K+A
Sbjct: 65 LLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPN 124
Query: 369 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 548
+V VV NPANTN LI+ ++APSIP++N + LTRLDHNRA+ Q++ + VP V+ II
Sbjct: 125 CKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVKNVII 184
Query: 549 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 728
WGNHS+TQYPD +H VK G E V + VK++ WL +F+ TVQ RGAA+I
Sbjct: 185 WGNHSSTQYPDVNHATVKTSVG-EKPVRELVKNDEWLNGEFISTVQQRGAAIIKARKLSS 243
Query: 729 XXXXXXXXXDHCRDWFHGTKE--WVSMAVYSDGSYGVPKDVIFSFPVTIEHGKWHIVQG 899
DH RDW GT E +VSM VYSDGSY VP +I+SFPVT +G+W IVQG
Sbjct: 244 ALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
>sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1
Length = 332
Score = 306 bits (785), Expect = 4e-83
Identities = 158/299 (52%), Positives = 198/299 (66%), Gaps = 2/299 (0%)
Frame = +3
Query: 9 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 188
P+ V++TGAAGQIGY LV +A G + G QP+ LH+LDIP +LNG+ MEL D AFP
Sbjct: 5 PVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELIDAAFP 64
Query: 189 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 368
L V AT D E V+ A+MVG PRKEGMERKD++ NV+I+K Q AL+K+A
Sbjct: 65 LLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKHAAPN 124
Query: 369 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 548
+V VV NPANTN LI+ ++APSIP++N S LTRLDHNRA+ QI+ + VP V+ II
Sbjct: 125 CKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVKNVII 184
Query: 549 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 728
WGNHS++QYPD +H V+ G E V + VKD+ WL +F+ TVQ RGAA+I
Sbjct: 185 WGNHSSSQYPDVNHAKVQTSSG-EKPVRELVKDDAWLDGEFISTVQQRGAAIIKARKLSS 243
Query: 729 XXXXXXXXXDHCRDWFHGTKE--WVSMAVYSDGSYGVPKDVIFSFPVTIEHGKWHIVQG 899
DH RDW GT E +VSM VYSDGSY VP +I+SFPVT +G W IVQG
Sbjct: 244 ALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQG 302
>sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic
Length = 332
Score = 305 bits (780), Expect = 2e-82
Identities = 156/299 (52%), Positives = 199/299 (66%), Gaps = 2/299 (0%)
Frame = +3
Query: 9 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 188
P+ V++TGAAGQIGY LV +A G + G +QP+ LH+LDIP +LNG+ MEL D AFP
Sbjct: 5 PLRVLVTGAAGQIGYALVPMIARGVMLGANQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
Query: 189 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 368
L V AT D+ EA V+ A+MVG PRKEGMERKD++ NV+I+K Q AL++YA
Sbjct: 65 LLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQYAAPN 124
Query: 369 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 548
+V VV NPANTN LI+ ++APSIP++N + LTRLDHNRA+ QI+ + V+ II
Sbjct: 125 CKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNAQVSDVKNVII 184
Query: 549 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 728
WGNHS++QYPD + VK G E +V + V D+ WL +F+ TVQ RGAA+I
Sbjct: 185 WGNHSSSQYPDVNPCTVKTGSG-EKAVRELVADDAWLNGEFITTVQQRGAAIIKARKLSS 243
Query: 729 XXXXXXXXXDHCRDWFHGTKE--WVSMAVYSDGSYGVPKDVIFSFPVTIEHGKWHIVQG 899
DH RDW GT E WVSM VYSDGSY VP +I+SFPVT + G+W IVQG
Sbjct: 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKDGEWKIVQG 302
>sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic
Length = 332
Score = 303 bits (776), Expect = 4e-82
Identities = 157/299 (52%), Positives = 198/299 (66%), Gaps = 2/299 (0%)
Frame = +3
Query: 9 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 188
P+ V++TGAAGQIGY LV +A G + G QP+ LH+LDIP +LNG+ MEL D AFP
Sbjct: 5 PMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
Query: 189 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 368
L V AT D+ EA V+ A+MVG PRKEGMERKD++ NV+I+K Q AL+ +A
Sbjct: 65 LLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAPN 124
Query: 369 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 548
+V VV NPANTN LI+ ++APSIP++N + LTRLDHNRA+ QI+ + V V+ II
Sbjct: 125 CKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVKNVII 184
Query: 549 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 728
WGNHS++QYPD +H VK G E V + V D+ WL +F+ TVQ RGAA+I
Sbjct: 185 WGNHSSSQYPDVNHATVKTSTG-EKPVRELVSDDEWLNGEFITTVQQRGAAIIKARKFSS 243
Query: 729 XXXXXXXXXDHCRDWFHGTKE--WVSMAVYSDGSYGVPKDVIFSFPVTIEHGKWHIVQG 899
DH RDW GT E +VSM VYSDGSYGVP +I+SFPVT G+W IVQG
Sbjct: 244 ALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQG 302
>sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic
Length = 332
Score = 302 bits (773), Expect = 1e-81
Identities = 157/299 (52%), Positives = 195/299 (65%), Gaps = 2/299 (0%)
Frame = +3
Query: 9 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 188
P+ V++TGAAGQIGY LV +A G + G QP+ LH+LDI SLNG+ MEL D AFP
Sbjct: 5 PVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVDAAFP 64
Query: 189 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 368
L V AT D+ EA V+ A+MVG PRKEGMERKD++ NV+I+K Q AL+K+A
Sbjct: 65 LLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAAN 124
Query: 369 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 548
+V VV NPANTN LI+ ++APSIP+ N S LTRLDHNRA+ QI+ + V V+ II
Sbjct: 125 CKVLVVANPANTNALILKEFAPSIPERNISCLTRLDHNRALGQISERLNVQVSDVKNVII 184
Query: 549 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 728
WGNHS+TQYPD +H V G E V V D+ WL +F+ TVQ RGAA+I
Sbjct: 185 WGNHSSTQYPDVNHATVNTPAG-EKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARKLSS 243
Query: 729 XXXXXXXXXDHCRDWFHGTKE--WVSMAVYSDGSYGVPKDVIFSFPVTIEHGKWHIVQG 899
DH RDW GT + +VSM VYSDGSY VP +I+SFPVT +G+W IVQG
Sbjct: 244 ALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIVQG 302
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,140,584
Number of Sequences: 369166
Number of extensions: 2230062
Number of successful extensions: 6091
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5948
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9414689480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)