Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_D15
(565 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 285 5e-77
sp|P41116|RL8_XENLA 60S ribosomal protein L8 284 1e-76
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 284 1e-76
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 283 2e-76
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 283 2e-76
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 279 3e-75
sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 277 1e-74
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 276 3e-74
sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8 273 3e-73
sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8 >gi|51701882|s... 272 4e-73
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 285 bits (729), Expect = 5e-77
Identities = 129/175 (73%), Positives = 155/175 (88%)
Frame = +3
Query: 3 AEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVS 182
AEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C LEEK GDRG++ARASGN A ++S
Sbjct: 79 AEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVIS 138
Query: 183 HNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPR 362
HN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPR
Sbjct: 139 HNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 363 VRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 527
VRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 199 VRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 284 bits (726), Expect = 1e-76
Identities = 128/175 (73%), Positives = 155/175 (88%)
Frame = +3
Query: 3 AEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVS 182
AEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C +EEK GDRG++ARASGN A ++S
Sbjct: 79 AEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVIS 138
Query: 183 HNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPR 362
HN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPR
Sbjct: 139 HNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 363 VRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 527
VRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 199 VRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 284 bits (726), Expect = 1e-76
Identities = 128/175 (73%), Positives = 155/175 (88%)
Frame = +3
Query: 3 AEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVS 182
AEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C +EEK GDRG++ARASGN A ++S
Sbjct: 79 AEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVIS 138
Query: 183 HNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPR 362
HN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPR
Sbjct: 139 HNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 363 VRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 527
VRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 199 VRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 283 bits (725), Expect = 2e-76
Identities = 128/175 (73%), Positives = 154/175 (88%)
Frame = +3
Query: 3 AEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVS 182
AEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C LEEK GDRG++ARASGN A ++S
Sbjct: 79 AEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVIS 138
Query: 183 HNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPR 362
HN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPR
Sbjct: 139 HNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 363 VRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 527
VRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+A RRTG LRGTK ++
Sbjct: 199 VRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAVRRTGRLRGTKTVQ 253
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 283 bits (724), Expect = 2e-76
Identities = 127/175 (72%), Positives = 155/175 (88%)
Frame = +3
Query: 3 AEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVS 182
AEG+ TGQF+YCGKKA++N+GNVLP+ ++PEGT++C LEEK GDRG++ARASGN A ++S
Sbjct: 79 AEGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVIS 138
Query: 183 HNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPR 362
HN ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPR
Sbjct: 139 HNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 363 VRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 527
VRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 199 VRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 279 bits (714), Expect = 3e-75
Identities = 127/175 (72%), Positives = 153/175 (87%)
Frame = +3
Query: 3 AEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVS 182
AEG+ TGQFV+CGKKA++N+GNVLP+ +PEGT+IC LEEK GDRG++ARASGN A ++S
Sbjct: 79 AEGIHTGQFVFCGKKAQLNIGNVLPVGVMPEGTIICCLEEKPGDRGKLARASGNYATVIS 138
Query: 183 HNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPR 362
HN ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYK KRNCWPR
Sbjct: 139 HNPETKKSRVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPILKAGRAYHKYKVKRNCWPR 198
Query: 363 VRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 527
VRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 199 VRGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8
Length = 261
Score = 277 bits (709), Expect = 1e-74
Identities = 125/172 (72%), Positives = 151/172 (87%)
Frame = +3
Query: 3 AEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVS 182
AEGM TGQFVYCG++A++ +GNV+PI +PEGT++CNLEEK+GDRG++AR SGN A +++
Sbjct: 79 AEGMYTGQFVYCGRRAQLQIGNVIPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIA 138
Query: 183 HNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPR 362
HN +T +TRVKLPSG KK+L S+ RAM+GIVAGGGRI+KP+LKAGRAYHKYK KRNCWP+
Sbjct: 139 HNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPK 198
Query: 363 VRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 518
VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 199 VRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 276 bits (706), Expect = 3e-74
Identities = 126/172 (73%), Positives = 150/172 (87%)
Frame = +3
Query: 3 AEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVS 182
AEGM TGQFVYCGK+A++ +GNVLPI +PEGT++CNLEEK+GDRG++AR SGN A +++
Sbjct: 79 AEGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIA 138
Query: 183 HNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPR 362
HN +T +TRVKLPSG KK+L S+ RAM+GIVAGGGRI+KP+LKAGRAY KYK KRNCWP+
Sbjct: 139 HNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPK 198
Query: 363 VRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 518
VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 199 VRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8
Length = 256
Score = 273 bits (697), Expect = 3e-73
Identities = 124/171 (72%), Positives = 147/171 (85%)
Frame = +3
Query: 6 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 185
EGM TGQFVYCG+KA + +GNV+P+ +PEGT+ICNLEEK+GDRGR+AR SGN A +++H
Sbjct: 80 EGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAH 139
Query: 186 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 365
N +T KTRVKLPSG KK++ S+ RAM+GIVAGGGRI+KP+LKAGRAYHKYK KRN WP+V
Sbjct: 140 NQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKV 199
Query: 366 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 518
RGV MNPV+HPHGGGNHQHIG STV R T GRKVGL+AARRTG +RG K
Sbjct: 200 RGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGK 250
>sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8
sp|Q6RYS3|RL8_MAMBR 60S ribosomal protein L8
Length = 257
Score = 272 bits (696), Expect = 4e-73
Identities = 125/171 (73%), Positives = 145/171 (84%)
Frame = +3
Query: 6 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 185
EG+ TGQFVYCGKKA + VGNV+P+ ++PEGT++CNLEEK GDRGR+ARASGN A ++ H
Sbjct: 80 EGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGH 139
Query: 186 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 365
N + +TRVKLPSG KK+L SS R M+GIVAGGGRI+KP+LKAGRAYHKYK KRNCWP V
Sbjct: 140 NPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYV 199
Query: 366 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 518
RGV MNPV+HPHGGGNHQHIG STV R T GRKVGL+AARRTG +RG K
Sbjct: 200 RGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGK 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,003,089
Number of Sequences: 369166
Number of extensions: 1332126
Number of successful extensions: 4113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3772
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)