Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_D08
(350 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 148 4e-36
sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha)... 147 7e-36
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 147 7e-36
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 147 7e-36
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 147 1e-35
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 147 1e-35
sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha) 147 1e-35
sp|Q9Y713|EF1A_ASPOR Elongation factor 1-alpha (EF-1-alpha) 146 1e-35
sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha) 146 2e-35
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 145 2e-35
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 148 bits (373), Expect = 4e-36
Identities = 67/84 (79%), Positives = 78/84 (92%)
Frame = +1
Query: 4 SGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCVET 183
+GY+PVLDCHTAHIACKFAEL +K+DRRSGK +ED PK KSGDAG++ LIP+KP+CVET
Sbjct: 355 AGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVET 414
Query: 184 FSEYPPLGRFAVRDMKQTVAVGVI 255
F+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 415 FTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha) (Translation elongation
factor 1A) (Eukaryotic elongation factor 1A) (eEF1A)
Length = 458
Score = 147 bits (371), Expect = 7e-36
Identities = 70/84 (83%), Positives = 75/84 (89%)
Frame = +1
Query: 4 SGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCVET 183
+GYSPVLDCHTAHIAC+F ELL+K DRRSGK LED PK KSGDA LVK +PSKPMCVE
Sbjct: 353 AGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEA 412
Query: 184 FSEYPPLGRFAVRDMKQTVAVGVI 255
FSEYPPLGRFAVRDM+QTVAVGVI
Sbjct: 413 FSEYPPLGRFAVRDMRQTVAVGVI 436
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 147 bits (371), Expect = 7e-36
Identities = 69/84 (82%), Positives = 77/84 (91%)
Frame = +1
Query: 4 SGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCVET 183
+GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V++IP KPMCVET
Sbjct: 355 AGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVET 414
Query: 184 FSEYPPLGRFAVRDMKQTVAVGVI 255
FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 415 FSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 147 bits (371), Expect = 7e-36
Identities = 68/84 (80%), Positives = 78/84 (92%)
Frame = +1
Query: 4 SGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCVET 183
+GY+PVLDCHTAHIACKFAELL+KIDRRSGK LED PK KSGD+ +VK+IPSKPMCVE
Sbjct: 353 AGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEA 412
Query: 184 FSEYPPLGRFAVRDMKQTVAVGVI 255
+++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 413 YTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 147 bits (370), Expect = 1e-35
Identities = 67/84 (79%), Positives = 77/84 (91%)
Frame = +1
Query: 4 SGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCVET 183
+GYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V+++P KPMCVE+
Sbjct: 355 AGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVES 414
Query: 184 FSEYPPLGRFAVRDMKQTVAVGVI 255
FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 415 FSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 147 bits (370), Expect = 1e-35
Identities = 67/84 (79%), Positives = 77/84 (91%)
Frame = +1
Query: 4 SGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCVET 183
+GYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V+++P KPMCVE+
Sbjct: 355 AGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVES 414
Query: 184 FSEYPPLGRFAVRDMKQTVAVGVI 255
FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 415 FSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha)
Length = 461
Score = 147 bits (370), Expect = 1e-35
Identities = 68/84 (80%), Positives = 78/84 (92%)
Frame = +1
Query: 4 SGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCVET 183
+GY+PVLDCHTAHIACKFAELL+KIDRR+GK +E+ PK KSGDA +VK+IPSKPMCVE
Sbjct: 354 AGYAPVLDCHTAHIACKFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCVEA 413
Query: 184 FSEYPPLGRFAVRDMKQTVAVGVI 255
F+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 414 FTEYPPLGRFAVRDMRQTVAVGVI 437
>sp|Q9Y713|EF1A_ASPOR Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 146 bits (369), Expect = 1e-35
Identities = 67/84 (79%), Positives = 79/84 (94%)
Frame = +1
Query: 4 SGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCVET 183
+GY+PVLDCHTAHIACKFAELL+KIDRR+GK +ED PK KSGDA +VK+IPSKPMCVE+
Sbjct: 354 NGYAPVLDCHTAHIACKFAELLEKIDRRTGKSVEDKPKFIKSGDAAIVKMIPSKPMCVES 413
Query: 184 FSEYPPLGRFAVRDMKQTVAVGVI 255
F+++PPLGRFAVRDM+QTVAVGVI
Sbjct: 414 FTDFPPLGRFAVRDMRQTVAVGVI 437
>sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha)
Length = 459
Score = 146 bits (368), Expect = 2e-35
Identities = 67/84 (79%), Positives = 78/84 (92%)
Frame = +1
Query: 4 SGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCVET 183
+GYSPVLDCHTAHIAC+F EL++KIDRRSGK +ED PK K+GDA +V++IPSKPMCVET
Sbjct: 353 AGYSPVLDCHTAHIACRFDELIEKIDRRSGKKVEDSPKFVKAGDAAIVRMIPSKPMCVET 412
Query: 184 FSEYPPLGRFAVRDMKQTVAVGVI 255
F+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 413 FTEYPPLGRFAVRDMRQTVAVGVI 436
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 145 bits (367), Expect = 2e-35
Identities = 68/84 (80%), Positives = 77/84 (91%)
Frame = +1
Query: 4 SGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPSKPMCVET 183
+GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V++IP KPMCVE+
Sbjct: 355 AGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVES 414
Query: 184 FSEYPPLGRFAVRDMKQTVAVGVI 255
FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 415 FSDYPPLGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,617,518
Number of Sequences: 369166
Number of extensions: 682549
Number of successful extensions: 2527
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2517
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)