Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_D04
(280 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14202|TEGU_SCHMA Tegument antigen (I(H)A) (Antigen SmA2... 48 6e-06
sp|P32070|SM21_SCHMA Antigen Sm21.7 40 0.002
sp|Q967W0|CAB2_ECHGR Calcium-binding protein II (CaBP-II) (... 36 0.024
sp|P65647|LACB_STAAN Galactose-6-phosphate isomerase lacB s... 35 0.041
sp|O75340|PDCD6_HUMAN Programmed cell death protein 6 (Prob... 35 0.054
sp|P12815|PDCD6_MOUSE Programmed cell death protein 6 (Prob... 35 0.054
sp|P68796|LACB_STAAU Galactose-6-phosphate isomerase lacB s... 35 0.070
sp|P04109|SPE1A_STRPU SPEC 1A protein 33 0.20
sp|Q07167|SM16_SCHMA 16 kDa calcium-binding protein (Egg an... 33 0.27
sp|P37709|TRHY_RABIT Trichohyalin 32 0.45
>sp|P14202|TEGU_SCHMA Tegument antigen (I(H)A) (Antigen SmA22.6) (A12)
Length = 190
Score = 48.1 bits (113), Expect = 6e-06
Identities = 21/64 (32%), Positives = 39/64 (60%)
Frame = +1
Query: 34 KMASMDDAFVNAFFSIDRQNSKKITKKQLEEFQNKNNYDDKFVDKWLNLFDREHTGLITL 213
K++ M++ F+ AF ID +++ I K++L ++ K D K +D W+ FD + I++
Sbjct: 6 KLSQMEE-FIRAFLEIDADSNEMIDKQELIKYCQKYRLDMKLIDPWIARFDTDKDNKISI 64
Query: 214 DEFC 225
+EFC
Sbjct: 65 EEFC 68
>sp|P32070|SM21_SCHMA Antigen Sm21.7
Length = 184
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 37 MASMDDAFVNAFFSIDRQNSKKITKKQLEEFQNKNNYDDKFVDKWLNLFDREHTGLITLD 216
M S + F+ + ++ R + + +L E K D K V++W+ LFD + IT +
Sbjct: 1 MDSPMEKFIQTYLTLLRDGDETVETSKLSESCRKEKLDMKQVNEWIALFDVDKDQKITFE 60
Query: 217 EFC 225
EFC
Sbjct: 61 EFC 63
>sp|Q967W0|CAB2_ECHGR Calcium-binding protein II (CaBP-II) (EgCaBPII)
Length = 70
Score = 36.2 bits (82), Expect = 0.024
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 37 MASMDDAFVNAFFSIDRQNSKKITKKQLEEFQNKNNYDDKFVDKWLNLFDREHTGLITLD 216
M S +AF+ S+D+ S I K+L ++ D+K V +++N D++H G + L
Sbjct: 1 MPSAVEAFLQ---SVDKDGSGTIDTKELLAALGESGLDEKLVQEFINEHDKDHDGQLNLK 57
Query: 217 EFCD 228
E D
Sbjct: 58 ELKD 61
>sp|P65647|LACB_STAAN Galactose-6-phosphate isomerase lacB subunit
sp|P65646|LACB_STAAM Galactose-6-phosphate isomerase lacB subunit
Length = 171
Score = 35.4 bits (80), Expect = 0.041
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 37 MASMDDAFVNAFFSIDRQNSKKITKKQLEEFQNKNNYDDKFVDKWLNLFDR 189
M + DAF+NA + +N K I K + E N + D F D++L +DR
Sbjct: 116 MCDIIDAFINAEYKATEENKKLIAKIKHLETSNADQADPHFFDEFLEKWDR 166
>sp|O75340|PDCD6_HUMAN Programmed cell death protein 6 (Probable calcium-binding protein
ALG-2)
Length = 191
Score = 35.0 bits (79), Expect = 0.054
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 64 NAFFSIDRQNSKKITKKQLEEFQNKNNY--DDKFVDKWLNLFDREHTGLITLDEF 222
N F + DR NS I K +L++ + Y D+F D + FDR+ G I D+F
Sbjct: 97 NVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 151
>sp|P12815|PDCD6_MOUSE Programmed cell death protein 6 (Probable calcium-binding protein
ALG-2) (PMP41) (ALG-257)
Length = 191
Score = 35.0 bits (79), Expect = 0.054
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 64 NAFFSIDRQNSKKITKKQLEEFQNKNNY--DDKFVDKWLNLFDREHTGLITLDEF 222
N F + DR NS I K +L++ + Y D+F D + FDR+ G I D+F
Sbjct: 97 NVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 151
>sp|P68796|LACB_STAAU Galactose-6-phosphate isomerase lacB subunit
sp|Q6GEN5|LACB_STAAR Galactose-6-phosphate isomerase lacB subunit
sp|Q6G7C0|LACB_STAAS Galactose-6-phosphate isomerase lacB subunit
sp|P68797|LACB_STAAW Galactose-6-phosphate isomerase lacB subunit
Length = 171
Score = 34.7 bits (78), Expect = 0.070
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 37 MASMDDAFVNAFFSIDRQNSKKITKKQLEEFQNKNNYDDKFVDKWLNLFDR 189
M + DAF+NA + +N K I K + E N + D F D++L +DR
Sbjct: 116 MCDIIDAFINAEYKPTEENKKLIAKIKHLETSNADQADPHFFDEFLEKWDR 166
>sp|P04109|SPE1A_STRPU SPEC 1A protein
Length = 152
Score = 33.1 bits (74), Expect = 0.20
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 58 FVNAFFSIDRQNSKKITKKQLEEF--QNKNNYDDKFVDKWLNLFDREHTGLITLDE 219
F F + D SK IT ++L EF +Y DK +DK ++ D + +G I E
Sbjct: 15 FKRRFKNKDTDKSKSITAEELGEFFKSTGKSYTDKQIDKMISDVDTDESGTIDFSE 70
>sp|Q07167|SM16_SCHMA 16 kDa calcium-binding protein (Egg antigen SME16)
Length = 143
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 70 FFSIDRQNSKKITKKQLEEFQNKN--NYDDKFVDKWLNLFDREHTGLITLDEF 222
F SID+ S K++ K+L+EF + + D + W+ D+ G + DEF
Sbjct: 82 FQSIDKDGSGKVSIKELDEFLKTSGMDIDQNSLRNWMTQNDKNKDGELDYDEF 134
>sp|P37709|TRHY_RABIT Trichohyalin
Length = 1407
Score = 32.0 bits (71), Expect = 0.45
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 19 LKIFNKMASMD-DAFVNAFFSIDRQNSKKITKKQLEEFQNKNNYDDKFVDKWLNLFDREH 195
++IFN+ AS D D V + +++ K + ++ + +D + VD L L DR+
Sbjct: 12 IEIFNQYASHDCDGAV-----LKKKDLKILLDREFGAVLQRP-HDPETVDVMLELLDRDS 65
Query: 196 TGLITLDEFC 225
GL+ DEFC
Sbjct: 66 DGLVGFDEFC 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,694,184
Number of Sequences: 369166
Number of extensions: 321698
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)