Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_D02
(409 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 89 3e-18
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 86 2e-17
sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precur... 75 7e-14
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 74 1e-13
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 73 2e-13
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 73 3e-13
sp|Q7ZZN8|CRVP2_NAJAT Natrin-2 precursor (Cysteine-rich ven... 73 3e-13
sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related pro... 72 4e-13
sp|Q8JI38|CRVP_LATSE Latisemin precursor 72 4e-13
sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type ... 71 1e-12
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 89.0 bits (219), Expect = 3e-18
Identities = 53/133 (39%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Frame = +2
Query: 14 VPNLTLDWELEKSAQENADKLAKTNSFSHS--KSEGKYGENLASSFNSKPGYIFTGDAAT 187
VP L L L + AQ+ ++ LA T HS S G+ GENLA + Y TG
Sbjct: 26 VPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWA-----SYDQTGKEVA 80
Query: 188 QNWYDEIKDYKFNDEAQQTGKIGHFSQVVWKDTKLCGFGRAKCINGNFIIVGQYKPPGNF 367
WY EIK+Y F +G GHF+ +VWK+TK G G+A +G+ +V +Y P GN
Sbjct: 81 DRWYSEIKNYNFQQPGFTSGT-GHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNV 139
Query: 368 L--GKFKENILSP 400
+ G F+EN+L P
Sbjct: 140 VNEGFFEENVLPP 152
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 86.3 bits (212), Expect = 2e-17
Identities = 52/133 (39%), Positives = 71/133 (53%), Gaps = 4/133 (3%)
Frame = +2
Query: 14 VPNLTLDWELEKSAQENADKLAKTNSFSHS--KSEGKYGENLASSFNSKPGYIFTGDAAT 187
VP L L +L + AQ+ ++ LA T HS S G+ GENLA + Y TG
Sbjct: 26 VPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENLAWA-----SYDQTGKDVA 80
Query: 188 QNWYDEIKDYKFNDEAQQTGKIGHFSQVVWKDTKLCGFGRAKCINGNFIIVGQYKPPGNF 367
WY EIK Y F +G GHF+ +VWK+TK G G+A +G+ +V +Y P GN
Sbjct: 81 DRWYSEIKSYNFQQPGFTSGT-GHFTAMVWKNTKKIGVGKASASDGSSFVVARYFPAGNI 139
Query: 368 L--GKFKENILSP 400
+ G F+EN+ P
Sbjct: 140 VNQGFFEENVPPP 152
>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precursor (PR-1A)
Length = 168
Score = 74.7 bits (182), Expect = 7e-14
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Frame = +2
Query: 14 VPNLTLDWELEKSAQENADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTGDAATQN 193
V LT D ++ AQ A +LA + HS G+YGENLA G T A +
Sbjct: 50 VEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAEG----SGDFMTAAKAVEM 103
Query: 194 WYDEIKDYKFNDEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCINGNFIIVGQYKPPGNFL 370
W DE + Y + G++ GH++QVVW+++ G R +C NG +++ Y PPGN+
Sbjct: 104 WVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYVVSCNYDPPGNYR 163
Query: 371 GK 376
G+
Sbjct: 164 GE 165
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 73.6 bits (179), Expect = 1e-13
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Frame = +2
Query: 14 VPNLTLDWELEKSAQENADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTGDAATQN 193
V LT D ++ AQ A +LA + HS G+YGENLA G T A +
Sbjct: 50 VEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAWG----SGDFLTAAKAVEM 103
Query: 194 WYDEIKDYKFNDEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCINGNFIIVGQYKPPGNFL 370
W +E + Y + G++ GH++QVVW+++ G R +C NG +I+ Y PPGN +
Sbjct: 104 WVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYIVSCNYDPPGNVI 163
Query: 371 GK 376
GK
Sbjct: 164 GK 165
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 73.2 bits (178), Expect = 2e-13
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = +2
Query: 14 VPNLTLDWELEKSAQENADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTGDAATQN 193
V LT D + AQ +LA + HS G+YGENLA G T A +
Sbjct: 50 VEPLTWDNGVAAYAQNYVSQLAADCNLVHS--HGQYGENLAQG----SGDFMTAAKAVEM 103
Query: 194 WYDEIKDYKFNDEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCINGNFIIVGQYKPPGNFL 370
W DE + Y + G++ GH++QVVW+++ G R KC NG +++ Y PPGN +
Sbjct: 104 WVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPGNVI 163
Query: 371 GK 376
G+
Sbjct: 164 GQ 165
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 72.8 bits (177), Expect = 3e-13
Identities = 50/124 (40%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Frame = +2
Query: 23 LTLDWELEKSAQENADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTGDAATQNWYD 202
LT L AQ AD+ + +HS +G YGENLA GY TG A WY
Sbjct: 46 LTWSDTLATYAQNYADQYDCSGVLTHS--DGPYGENLAL------GYTDTG--AVDAWYG 95
Query: 203 EIKDYKFNDEAQQTGKIGHFSQVVWKDTKLCGFGRAKC-INGNFIIVGQYKPPGNFLGKF 379
EI Y +++ GHF+QVVWK T G G C N IV Y PPGN+LG+F
Sbjct: 96 EISKYNYSNPGFSEST-GHFTQVVWKSTAEIGCGYKYCGTTWNNYIVCSYNPPGNYLGEF 154
Query: 380 KENI 391
E +
Sbjct: 155 AEEV 158
>sp|Q7ZZN8|CRVP2_NAJAT Natrin-2 precursor (Cysteine-rich venom protein 2) (NA-CRVP2)
(Protein G2b)
Length = 238
Score = 72.8 bits (177), Expect = 3e-13
Identities = 51/135 (37%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Frame = +2
Query: 2 ALRRVPNLT----LDWELEKSAQENADKLAKTNSFSHS----KSEGKYG--ENLASSFNS 151
ALRR T L E +A +NA + A SF+HS ++ GK G ENL S S
Sbjct: 43 ALRRSVRPTARNMLQMEWNSNAAQNAKRWADRCSFAHSPPHLRTVGKIGCGENLFMS--S 100
Query: 152 KPGYIFTGDAATQNWYDEIKDYKFNDEAQQTGK-IGHFSQVVWKDTKLCGFGRAKCINGN 328
+P + Q+WYDE K + + A G IGH++Q+VW ++ L G G AKC +
Sbjct: 101 QP---YAWSRVIQSWYDENKKFVYGVGANPPGSVIGHYTQIVWYNSHLLGCGAAKCSSSK 157
Query: 329 FIIVGQYKPPGNFLG 373
++ V QY P GN +G
Sbjct: 158 YLYVCQYCPTGNIIG 172
>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
Length = 177
Score = 72.0 bits (175), Expect = 4e-13
Identities = 42/118 (35%), Positives = 59/118 (50%)
Frame = +2
Query: 23 LTLDWELEKSAQENADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTGDAATQNWYD 202
+T D L AQ A++ HS G YGENLA++F A + W D
Sbjct: 46 MTWDNRLAAYAQNYANQRIGDCGMIHS--HGPYGENLAAAFPQ-----LNAAGAVKMWVD 98
Query: 203 EIKDYKFNDEAQQTGKIGHFSQVVWKDTKLCGFGRAKCINGNFIIVGQYKPPGNFLGK 376
E + Y +N + G GH++QVVW+++ G R + NG F I Y PPGNF+G+
Sbjct: 99 EKRFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARVRSNNGWFFITCNYDPPGNFIGQ 156
>sp|Q8JI38|CRVP_LATSE Latisemin precursor
Length = 238
Score = 72.0 bits (175), Expect = 4e-13
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Frame = +2
Query: 23 LTLDWELE--KSAQENADKLAKTNSFSHSKSEGKY--GENLASSFNSKPGYIFTGDAATQ 190
L ++W + ++AQ AD+ + +S SH ++ GK+ GENL S S+P + Q
Sbjct: 56 LQMEWNSDAAQNAQRWADRCSFAHSPSHLRTVGKFSCGENLFMS--SQP---YAWSRVIQ 110
Query: 191 NWYDEIKDYKFNDEAQQTGK-IGHFSQVVWKDTKLCGFGRAKCINGNFIIVGQYKPPGNF 367
+WYDE K++ ++ A G IGH++Q+VW + L G A+C + ++ V QY P GN
Sbjct: 111 SWYDENKNFIYDVGANPPGSVIGHYTQIVWYKSHLLGCAAARCSSSKYLYVCQYCPAGNI 170
Query: 368 LG 373
+G
Sbjct: 171 IG 172
>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type precursor
Length = 167
Score = 70.9 bits (172), Expect = 1e-12
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Frame = +2
Query: 23 LTLDWELEKSAQENADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTGDAATQNWYD 202
+T D + A++ A A HS + +YGENLA F S G+ TG A W
Sbjct: 51 VTWDESVAAFARQYAQSRAGDCRLVHS-GDPRYGENLA--FGS--GFELTGRNAVDMWVA 105
Query: 203 EIKDYKFNDEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCINGNFIIVGQYKPPGNFLGK 376
E DY N GK+ GH++QVVW+++ G R +C NG + I Y PPGN+ G+
Sbjct: 106 ERNDYNPNTNTCAPGKVCGHYTQVVWRNSVRIGCARVRCNNGAWFITCNYSPPGNYAGQ 164
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,718,813
Number of Sequences: 369166
Number of extensions: 1026858
Number of successful extensions: 2929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2862
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)