Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_C11
(181 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O76485|CSK2B_SPOFR Casein kinase II beta subunit (CK II ... 39 0.004
sp|P08182|CSK2B_DROME Casein kinase II beta subunit (CK II ... 31 0.77
sp|Q8PZB2|Y582_METMA Hypothetical glycosyl transferase MM0582 31 1.0
sp|Q8TTI0|Y453_METAC Hypothetical glycosyl transferase MA0453 30 1.7
sp|P28021|CSK2B_XENLA Casein kinase II beta subunit (CK II ... 28 6.5
sp|P67870|CSK2B_HUMAN Casein kinase II beta subunit (CK II ... 28 6.5
>sp|O76485|CSK2B_SPOFR Casein kinase II beta subunit (CK II beta)
Length = 221
Score = 38.9 bits (89), Expect = 0.004
Identities = 20/29 (68%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +1
Query: 4 HPLAYQILYQAAANCKMPPRN-AYGNGKR 87
HPLAYQI QAAAN K P R+ +Y NGKR
Sbjct: 193 HPLAYQIQQQAAANFKAPLRSLSYNNGKR 221
>sp|P08182|CSK2B_DROME Casein kinase II beta subunit (CK II beta)
Length = 235
Score = 31.2 bits (69), Expect = 0.77
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = +1
Query: 4 HPLAYQILYQAAANCKMPPRNAYG 75
H LAYQI QAAAN KMP R G
Sbjct: 193 HSLAYQIQLQAAANFKMPLRAQRG 216
>sp|Q8PZB2|Y582_METMA Hypothetical glycosyl transferase MM0582
Length = 376
Score = 30.8 bits (68), Expect = 1.0
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2
Query: 138 KSYYLFEF*SIQK*LILSFPISVRVTRRHFTVSRSLIQNL 19
K +Y + F S+ ++ +P+ V R++FT+SR++ N+
Sbjct: 147 KRFYNYVFSSVDGIIVPDYPLPYSVNRKNFTISRAVNDNI 186
>sp|Q8TTI0|Y453_METAC Hypothetical glycosyl transferase MA0453
Length = 388
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -2
Query: 144 LQKSYYLFEF*SIQK*LILSFPISVRVTRRHFTVSRSLIQNL 19
L + +Y + F S+ ++ +P+ V RR+FT+ R+L N+
Sbjct: 145 LVRRFYNYIFSSVDGIMVPDYPLPYSVNRRNFTIPRALNPNI 186
>sp|P28021|CSK2B_XENLA Casein kinase II beta subunit (CK II beta) (Phosvitin)
Length = 215
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 4 HPLAYQILYQAAANCKMP 57
HP+AYQ+ QAA+N K P
Sbjct: 193 HPMAYQLQLQAASNFKSP 210
>sp|P67870|CSK2B_HUMAN Casein kinase II beta subunit (CK II beta) (Phosvitin) (G5a)
sp|P67874|CSK2B_RAT Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67873|CSK2B_RABIT Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67872|CSK2B_PIG Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67871|CSK2B_MOUSE Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67869|CSK2B_CHICK Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67868|CSK2B_BOVIN Casein kinase II beta subunit (CK II beta) (Phosvitin)
Length = 215
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 4 HPLAYQILYQAAANCKMP 57
HP+AYQ+ QAA+N K P
Sbjct: 193 HPMAYQLQLQAASNFKSP 210
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,305,574
Number of Sequences: 369166
Number of extensions: 281122
Number of successful extensions: 497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 68,354,980
effective HSP length: 32
effective length of database: 62,443,460
effective search space used: 1685973420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)