Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_B13
(742 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P93318|M660_ARATH Hypothetical mitochondrial protein AtM... 30 8.8
sp|Q56989|HMUR_YERPE Hemin receptor precursor 30 8.8
>sp|P93318|M660_ARATH Hypothetical mitochondrial protein AtMg00660 (ORF149)
Length = 149
Score = 29.6 bits (65), Expect = 8.8
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -3
Query: 527 AAWGKHKDIRCNIPNNTRWDRMNTAPRTGTRSCNIQNREGTPHCHKDPRLP 375
A W K K +RC+ P + PR R RE +PH D R P
Sbjct: 23 ALWSKGKRVRCHTP------CLPKVPRGRARRSGATTREQSPHRQGDRRRP 67
>sp|Q56989|HMUR_YERPE Hemin receptor precursor
Length = 676
Score = 29.6 bits (65), Expect = 8.8
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 351 RIRSTRIKWQPGVLMAVGCTLPVLNITA--TSTRTGGRIHTIPTRII 485
R S R +W + +A+ CTLP+ A T+T+T + H+ T ++
Sbjct: 3 RSTSDRFRWS-SLSLAIACTLPLATQAADTTTTQTSSKKHSTDTMVV 48
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,317,448
Number of Sequences: 369166
Number of extensions: 1112094
Number of successful extensions: 2333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2328
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)