Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_B11
(561 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P58296|SCXB_CENNO Neurotoxin Cn11 30 5.3
sp|P50090|KEL2_YEAST Kelch repeats protein 2 30 5.3
sp|Q9U943|APLP_LOCMI Apolipophorins precursor [Contains: Ap... 29 7.0
>sp|P58296|SCXB_CENNO Neurotoxin Cn11
Length = 63
Score = 29.6 bits (65), Expect = 5.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 308 LCEDKWCNKVCDYRNARLGY 367
L DKWCN C R + GY
Sbjct: 17 LINDKWCNSACHSRGGKYGY 36
>sp|P50090|KEL2_YEAST Kelch repeats protein 2
Length = 882
Score = 29.6 bits (65), Expect = 5.3
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 144 NLNKLHDVIY*RSETVYISIQLHTDVFKLLSQRISIQ-SILHPNCINDIVMNYSYDSVKT 320
+LNK+ VI ETV +LH + KL +R S++ ++L N D + S S K+
Sbjct: 726 SLNKIEKVINEMHETVRAKEKLHLETQKLNDERDSLRANLLDNNNKLDALRKLSDGSSKS 785
Query: 321 SGVTKYVI 344
+TK I
Sbjct: 786 MDLTKKAI 793
>sp|Q9U943|APLP_LOCMI Apolipophorins precursor [Contains: Apolipophorin-2 (Apolipophorin
II) (apoLp-2); Apolipophorin-1 (Apolipophorin I)
(apoLp-1)]
Length = 3380
Score = 29.3 bits (64), Expect = 7.0
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +3
Query: 207 LHTDVFKLLSQRISIQSILHPNCINDIVMNYSYDSVKTSGVTKYVIIETRGWDIELDNLI 386
L D+FK +Q+ISI S + ND+V S VK+ G + + RG +LI
Sbjct: 2247 LEIDIFKQKNQKISISSTVVEQKQNDVVKYLSTLDVKSKG--HELDVTGRGEATVKPSLI 2304
Query: 387 NEKIYVRGKNIRRRKSQSN--MNIPTEK 464
+ ++ K +R K N + TEK
Sbjct: 2305 ALQSVLKYKKDKRIKEFKNFQFEVSTEK 2332
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,483,663
Number of Sequences: 369166
Number of extensions: 935009
Number of successful extensions: 2093
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2092
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)