Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_B06
(862 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49) 290 4e-78
sp|Q95PU1|TPM_ECHMU Tropomyosin 288 1e-77
sp|Q26519|TPM_SCHJA Tropomyosin 288 1e-77
sp|Q26503|TPM_SCHHA Tropomyosin 286 5e-77
sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII) 278 2e-74
sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1) 274 2e-73
sp|Q23758|TPM_CLOSI Tropomyosin 270 3e-72
sp|Q9GZ71|TPM_HALDV Tropomyosin 270 4e-72
sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII) 266 4e-71
sp|P42636|TPM1_BIOGL Tropomyosin 1 (TMI) (Bg 39) 261 2e-69
>sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49)
Length = 284
Score = 290 bits (742), Expect = 4e-78
Identities = 159/231 (68%), Positives = 178/231 (77%)
Frame = +1
Query: 169 ELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTES 348
EL ++ AQ +CDEAQE L E KLE T+KRAT+AEAEVAA+TRRI+L+E DLE + S
Sbjct: 45 ELNNKMKQAQIDCDEAQETLQEQMNKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSS 104
Query: 349 RFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDE 528
R E KLE ASK AEESE+ RK LE RSIADDE+L QLE+Q KEAKYIAEDADRKYDE
Sbjct: 105 RLTETLTKLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDE 164
Query: 529 VARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDT 708
ARKLAIAEVD ER EARLE ESK +VVGNNMK+LEISEQE+AQREESYE+T
Sbjct: 165 AARKLAIAEVDFERAEARLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYEET 224
Query: 709 IRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELD 861
IRDLTERLK VSKLQ+EVD LEDDLL+EKE+YKALS ELD
Sbjct: 225 IRDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELD 275
>sp|Q95PU1|TPM_ECHMU Tropomyosin
Length = 284
Score = 288 bits (738), Expect = 1e-77
Identities = 156/259 (60%), Positives = 188/259 (72%)
Frame = +1
Query: 85 NAGEKSTSXXXXXXXXXXXXXXXXDAMQELQKSLQTAQQECDEAQEALAEANTKLEATEK 264
NA EK+ + + M + ++ Q E D QE+L EA +KLE TEK
Sbjct: 17 NALEKAINLENQLKEKAKDFEKKEEEMNDWLSKVKNIQTEVDTVQESLQEAISKLEETEK 76
Query: 265 RATDAEAEVAALTRRIQLIEADLEQTESRFQEASGKLEGASKDAEESEKNRKILETRSIA 444
RAT+AEAEVAA+TRRI+L+E D EQ+ R E S KL+ ASK AEESE+NRK LETRSI+
Sbjct: 77 RATNAEAEVAAMTRRIRLLEEDFEQSSGRLTETSTKLDDASKAAEESERNRKTLETRSIS 136
Query: 445 DDEKLAQLEEQVKEAKYIAEDADRKYDEVARKLAIAEVDLERTEARLENCESKTXXXXXX 624
DDE++AQLEEQVKEAKYIAEDA+RKYDE AR+LA+ EVDLER E+RLE ESK
Sbjct: 137 DDERMAQLEEQVKEAKYIAEDAERKYDEAARRLAVTEVDLERAESRLETSESKIVELEEE 196
Query: 625 XKVVGNNMKSLEISEQEAAQREESYEDTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRL 804
++VGNNMKSLE+SEQE+ QREESYE+TIRDLTERLK VSKLQ+EVDRL
Sbjct: 197 LRIVGNNMKSLEVSEQESLQREESYEETIRDLTERLKTAEQRAAEAERQVSKLQNEVDRL 256
Query: 805 EDDLLSEKEKYKALSDELD 861
ED+LLSEKE+Y+A+S ELD
Sbjct: 257 EDELLSEKERYRAISGELD 275
>sp|Q26519|TPM_SCHJA Tropomyosin
Length = 284
Score = 288 bits (738), Expect = 1e-77
Identities = 158/233 (67%), Positives = 178/233 (76%)
Frame = +1
Query: 163 MQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQT 342
+ EL ++ AQ +CDE QE L E KLE TEKRAT+AEA+VAA+TRRI+L+E DLE +
Sbjct: 43 ISELNTKMKQAQIDCDEVQETLQEQMNKLEETEKRATNAEAQVAAMTRRIRLLEEDLEVS 102
Query: 343 ESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKY 522
SR E KLE ASK AEESE+ RK LE RSIADDE+L QLE+Q KEAKYIAEDADRKY
Sbjct: 103 SSRLTETLTKLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKY 162
Query: 523 DEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYE 702
DE ARKLAIAEVD ER EARLE ESK +VVGNNMK+LEISEQE+AQREESYE
Sbjct: 163 DEAARKLAIAEVDFERAEARLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYE 222
Query: 703 DTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELD 861
+TIRDLTERLK VSKLQ+EVD LEDDLL+EKE+YKALS ELD
Sbjct: 223 ETIRDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELD 275
>sp|Q26503|TPM_SCHHA Tropomyosin
Length = 284
Score = 286 bits (732), Expect = 5e-77
Identities = 156/231 (67%), Positives = 177/231 (76%)
Frame = +1
Query: 169 ELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTES 348
EL ++ AQ +CDE QE L E KLE T+KRAT+AEAEVAA+TRRI+L+E DLE + S
Sbjct: 45 ELNTKMKQAQIDCDEVQETLQEQMNKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSS 104
Query: 349 RFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDE 528
R E KLE ASK AEESE+ RK LE RSIADDE+L QLE+Q KEAKYIAEDADRKYDE
Sbjct: 105 RLTETLTKLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDE 164
Query: 529 VARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDT 708
ARKLAIAEVD +R EARLE ESK +V+GNNMK+LEISEQE+AQREESYE+T
Sbjct: 165 AARKLAIAEVDFKRAEARLEAAESKIVELEEELRVIGNNMKALEISEQESAQREESYEET 224
Query: 709 IRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELD 861
IRDLTERLK VSKLQ+EVD LEDDLL+EKE+YKALS ELD
Sbjct: 225 IRDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELD 275
>sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII)
Length = 284
Score = 278 bits (710), Expect = 2e-74
Identities = 147/235 (62%), Positives = 175/235 (74%)
Frame = +1
Query: 157 DAMQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLE 336
+ LQK Q + D A E L EA TKLEA+EK + E++ A L RRIQL+E DLE
Sbjct: 41 EEFNNLQKKFSNLQNDFDTANEGLTEAQTKLEASEKHVAELESDTAGLNRRIQLLEEDLE 100
Query: 337 QTESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADR 516
++E R Q A+ KLE ASK A+ESE+ RK+LE+RS+ADDE+L LE Q+KEAKYIAEDA+R
Sbjct: 101 RSEERLQSATEKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAER 160
Query: 517 KYDEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREES 696
KYDE ARKLAI EVDLER EARLE E+K KVVGNNMKSLEISEQEA+QRE+S
Sbjct: 161 KYDEAARKLAITEVDLERAEARLEAAEAKIIELEEELKVVGNNMKSLEISEQEASQREDS 220
Query: 697 YEDTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELD 861
YE+TIRDLT+RLK VSKLQ EVDRLED+LL+EKE+YK++SDELD
Sbjct: 221 YEETIRDLTQRLKDAENRATEAERTVSKLQKEVDRLEDELLAEKERYKSISDELD 275
>sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1)
Length = 284
Score = 274 bits (701), Expect = 2e-73
Identities = 146/233 (62%), Positives = 175/233 (75%)
Frame = +1
Query: 163 MQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQT 342
+ LQK + + D E L +ANTKLEA+EK+ + E+E A L RRIQL+E DLE++
Sbjct: 43 LNNLQKKFAILENDFDSINEQLLDANTKLEASEKKNAEIESETAGLQRRIQLLEEDLERS 102
Query: 343 ESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKY 522
E R Q A+ KLE ASK A+ESE+ RK+LE+RS+ADDE+L LE Q+KEAKYIAEDA+RK+
Sbjct: 103 EERLQSATEKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAERKF 162
Query: 523 DEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYE 702
DE ARKLAI EVDLER EARLE E+K KVVGNNMKSLEISEQEA+QRE+SYE
Sbjct: 163 DEAARKLAITEVDLERAEARLEAAEAKILELEEELKVVGNNMKSLEISEQEASQREDSYE 222
Query: 703 DTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELD 861
+TIRDLT+RLK VSKLQ EVDRLED+LL+EKE+YKA SDELD
Sbjct: 223 ETIRDLTQRLKDAENRASEAERTVSKLQKEVDRLEDELLAEKERYKATSDELD 275
>sp|Q23758|TPM_CLOSI Tropomyosin
Length = 284
Score = 270 bits (691), Expect = 3e-72
Identities = 149/231 (64%), Positives = 171/231 (74%)
Frame = +1
Query: 169 ELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTES 348
EL ++ AQ E DE QEAL ++ K+E T+KRAT+AEAEVA +TRRI+L+E DLE + S
Sbjct: 45 ELNNRMKQAQTELDEIQEALQDSLNKMEETDKRATNAEAEVARMTRRIRLLEEDLEVSSS 104
Query: 349 RFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDE 528
R E K + ASK AEESE+ RK LE RSIADDE L+QLE+Q KE KYIAEDADRKYDE
Sbjct: 105 RLTETLAKFDEASKTAEESERGRKELEIRSIADDEGLSQLEDQQKEGKYIAEDADRKYDE 164
Query: 529 VARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDT 708
ARKLAI EVD ER E+RLE ESK +VVGNNMK+LEISEQE+AQREESYE+T
Sbjct: 165 AARKLAIVEVDFERAESRLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYEET 224
Query: 709 IRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELD 861
IRDLTERLK VSKLQ+EVD LEDDLLSEK +YK LS LD
Sbjct: 225 IRDLTERLKAAEQRAAEAERQVSKLQNEVDHLEDDLLSEKIRYKDLSGGLD 275
Score = 40.4 bits (93), Expect = 0.006
Identities = 51/242 (21%), Positives = 89/242 (36%), Gaps = 14/242 (5%)
Frame = +1
Query: 163 MQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQT 342
M ++K + + E + A E + +L+ E+ E E+ L R++ + +L++
Sbjct: 1 MDGIKKKMIAMKLEKENAMERAVQYEAQLKQKEEEQEKKETEIGELNNRMKQAQTELDEI 60
Query: 343 ESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKY 522
+ Q++ K+E K A +E AE A
Sbjct: 61 QEALQDSLNKMEETDKRATNAE------------------------------AEVA---- 86
Query: 523 DEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEI---------SEQE 675
+ R++ + E DLE + +RL +K + K LEI S+ E
Sbjct: 87 -RMTRRIRLLEEDLEVSSSRLTETLAKFDEASKTAEESERGRKELEIRSIADDEGLSQLE 145
Query: 676 AAQREESY--EDTIRDLTERLKXXXXXXXXXXXXVSKL---QSEVDRLEDDLLSEKEKYK 840
Q+E Y ED R E + S+L +S++ LE++L K
Sbjct: 146 DQQKEGKYIAEDADRKYDEAARKLAIVEVDFERAESRLEAAESKIVELEEELRVVGNNMK 205
Query: 841 AL 846
AL
Sbjct: 206 AL 207
>sp|Q9GZ71|TPM_HALDV Tropomyosin
Length = 284
Score = 270 bits (690), Expect = 4e-72
Identities = 143/233 (61%), Positives = 172/233 (73%)
Frame = +1
Query: 163 MQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQT 342
+ LQK + + D E L EA KLE +EKR T+ E EV+ TR+I L+E DLE+
Sbjct: 43 LNNLQKKCANLENDFDNVNEQLQEAMAKLETSEKRVTEMEQEVSGTTRKITLLEEDLERN 102
Query: 343 ESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKY 522
E R Q A+ +LE ASK A+ESE+ ++LE+RS+ADDE++ QLE Q+KEAKYIAEDA+RKY
Sbjct: 103 EERLQTATERLEEASKAADESERGARVLESRSLADDERIDQLEAQLKEAKYIAEDAERKY 162
Query: 523 DEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYE 702
DE ARKLAI EVDLER EARLE E+K KVVGNNMKSLEISEQEA+QRE+SYE
Sbjct: 163 DEAARKLAITEVDLERAEARLEAAEAKILELEEELKVVGNNMKSLEISEQEASQREDSYE 222
Query: 703 DTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELD 861
+TIRDLT+RLK VSKLQ EVDRLED+LL+EKEKYKA+SDELD
Sbjct: 223 ETIRDLTQRLKDAENRATEAERTVSKLQKEVDRLEDELLAEKEKYKAISDELD 275
>sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII)
Length = 284
Score = 266 bits (681), Expect = 4e-71
Identities = 139/235 (59%), Positives = 180/235 (76%)
Frame = +1
Query: 157 DAMQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLE 336
+ + E+ K +Q + + AQ LAE NTKLE T+KRAT+AEAEVA+L +RI+ +E +LE
Sbjct: 41 EEVAEVLKKIQQVDTDKETAQTQLAETNTKLEETDKRATEAEAEVASLQKRIRQLEDELE 100
Query: 337 QTESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADR 516
TE+R QEA+ KLE ASK A+ES++ RK+LE R+ AD+E++ QLEEQ+KE+ ++AEDADR
Sbjct: 101 STETRLQEATVKLEEASKAADESDRGRKVLENRTFADEERINQLEEQLKESTFMAEDADR 160
Query: 517 KYDEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREES 696
KYDE ARKLAI EV+LER E+RLE ESK ++VGNN+KSLEISEQEAAQREE+
Sbjct: 161 KYDEAARKLAITEVELERAESRLEAAESKITELEEELRIVGNNVKSLEISEQEAAQREEA 220
Query: 697 YEDTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELD 861
YE+ IRDLTERLK V+ LQ++ DRLED+L++EKEKYKALS+ELD
Sbjct: 221 YEENIRDLTERLKAAEDRAQESERLVNTLQADADRLEDELVTEKEKYKALSEELD 275
>sp|P42636|TPM1_BIOGL Tropomyosin 1 (TMI) (Bg 39)
Length = 284
Score = 261 bits (667), Expect = 2e-69
Identities = 136/235 (57%), Positives = 169/235 (71%)
Frame = +1
Query: 157 DAMQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLE 336
+ LQ Q + D A E L EA TKLEA+EK + E++ A L RRIQL+E DLE
Sbjct: 41 EEFNNLQNKFSNLQNDFDTANEGLTEAQTKLEASEKHVAELESDTAGLNRRIQLLEEDLE 100
Query: 337 QTESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADR 516
++E R Q A+ KLE ASK A+ESE+ RK+LE+RS+ADDE+L LE Q+KEAKYIAEDA+R
Sbjct: 101 RSEERLQSATEKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAER 160
Query: 517 KYDEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREES 696
KYDE ARKLAI EVDLER EARLE E+K +VGNN+K+L I +A+QRE+S
Sbjct: 161 KYDEAARKLAITEVDLERAEARLEAAEAKVWELDEELHIVGNNIKTLSIQNDQASQREDS 220
Query: 697 YEDTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELD 861
Y++TIRDLT+RLK VSKLQ EVDRLED+LL+EKE+YK++SDELD
Sbjct: 221 YQETIRDLTQRLKDAENRATEAERTVSKLQKEVDRLEDELLAEKERYKSISDELD 275
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.305 0.122 0.302
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,199,374
Number of Sequences: 369166
Number of extensions: 644418
Number of successful extensions: 4230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3848
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)