Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_A22
(604 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related pr... 231 8e-61
sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related pr... 231 8e-61
sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related pr... 230 2e-60
sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related pr... 223 2e-58
sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related pr... 215 6e-56
sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related pr... 215 8e-56
sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related pr... 214 2e-55
sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related pr... 208 1e-53
sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related pr... 159 4e-39
sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related pr... 157 3e-38
>sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 231 bits (590), Expect = 8e-61
Identities = 106/153 (69%), Positives = 128/153 (83%)
Frame = +3
Query: 6 ARGDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLS 185
++ +FS DVGYE+FLGPE+FF PEF N DF IS+VVD VIQ+CPID RRPLY NIVLS
Sbjct: 263 SKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLS 322
Query: 186 GGSSMFKHLDRRIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGA 365
GGS+MF+ RR+QRD+K+ VD RLKL+EE S G+LKP PIDV+V++H MQRYAVWFGG+
Sbjct: 323 GGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGS 382
Query: 366 LLASSDDFYTAAHTKKQYDEIGPSICRHNPVFG 464
+LAS+ +FY HTKK Y+EIGPSICRHNPVFG
Sbjct: 383 MLASTPEFYQVCHTKKDYEEIGPSICRHNPVFG 415
>sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related protein 3) (Actin-2)
sp|P61158|ARP3_HUMAN Actin-like protein 3 (Actin-related protein 3)
sp|Q5R8R1|ARP3_PONPY Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 231 bits (590), Expect = 8e-61
Identities = 106/153 (69%), Positives = 128/153 (83%)
Frame = +3
Query: 6 ARGDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLS 185
++ +FS DVGYE+FLGPE+FF PEF N DF IS+VVD VIQ+CPID RRPLY NIVLS
Sbjct: 263 SKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLS 322
Query: 186 GGSSMFKHLDRRIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGA 365
GGS+MF+ RR+QRD+K+ VD RLKL+EE S G+LKP PIDV+V++H MQRYAVWFGG+
Sbjct: 323 GGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGS 382
Query: 366 LLASSDDFYTAAHTKKQYDEIGPSICRHNPVFG 464
+LAS+ +FY HTKK Y+EIGPSICRHNPVFG
Sbjct: 383 MLASTPEFYQVCHTKKDYEEIGPSICRHNPVFG 415
>sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 230 bits (587), Expect = 2e-60
Identities = 105/150 (70%), Positives = 126/150 (84%)
Frame = +3
Query: 15 DFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGS 194
+F+ DVGYE+FLGPE+FF PEF N DF IS+VVD VIQ+CPID RRPLY NIVLSGGS
Sbjct: 266 EFTIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGS 325
Query: 195 SMFKHLDRRIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLA 374
+MF+ RR+QRD+K+ VD RLK++EE S GKLKP PIDV+V++H MQRYAVWFGG++LA
Sbjct: 326 TMFRDFGRRLQRDLKRTVDARLKMSEELSGGKLKPKPIDVQVITHHMQRYAVWFGGSMLA 385
Query: 375 SSDDFYTAAHTKKQYDEIGPSICRHNPVFG 464
S+ +FY HTKK Y+EIGPSICRHNPVFG
Sbjct: 386 STPEFYQVCHTKKDYEEIGPSICRHNPVFG 415
>sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
66B) (Actin-2)
Length = 418
Score = 223 bits (569), Expect = 2e-58
Identities = 100/152 (65%), Positives = 124/152 (81%)
Frame = +3
Query: 9 RGDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSG 188
+ F+ DVGYE+FLGPE+FF PEF N DF +S++VD VIQ+CPID RRPLYNNIVLSG
Sbjct: 264 KAPFNVDVGYERFLGPEIFFHPEFSNPDFTIPLSEIVDNVIQNCPIDVRRPLYNNIVLSG 323
Query: 189 GSSMFKHLDRRIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGAL 368
GS+MFK RR+QRDIK+ VD RL+++E S G++KP PIDV+V++H MQRYAVWFGG++
Sbjct: 324 GSTMFKDFGRRLQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSM 383
Query: 369 LASSDDFYTAAHTKKQYDEIGPSICRHNPVFG 464
LAS+ +FY HTK Y+E GPSICRHNPVFG
Sbjct: 384 LASTPEFYQVCHTKAAYEEYGPSICRHNPVFG 415
>sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related protein 3)
Length = 426
Score = 215 bits (548), Expect = 6e-56
Identities = 98/149 (65%), Positives = 122/149 (81%)
Frame = +3
Query: 18 FSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSS 197
FS DVGYE+FLGPE+FF PEF N DF T ISD +DT+IQ CPID RR LY NIVLSGGS+
Sbjct: 275 FSVDVGYERFLGPEIFFHPEFCNPDFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGST 334
Query: 198 MFKHLDRRIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLAS 377
MFK R++QRD+K++ D RL+++E S G+LKP PIDV+V+SH MQRYAVWFGG++LAS
Sbjct: 335 MFKDFARKLQRDVKRLSDARLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLAS 394
Query: 378 SDDFYTAAHTKKQYDEIGPSICRHNPVFG 464
+ +FY +H+K +Y E GPSICR+NPVFG
Sbjct: 395 TSEFYQVSHSKAEYMEKGPSICRYNPVFG 423
>sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related protein 3)
Length = 427
Score = 215 bits (547), Expect = 8e-56
Identities = 96/149 (64%), Positives = 122/149 (81%)
Frame = +3
Query: 18 FSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSS 197
++ DVGYE+FLGPE+FF PE ++DF T + VVD IQSCPID+RR LY NIVLSGGS+
Sbjct: 275 YNVDVGYERFLGPEIFFNPEIFSSDFLTPLPKVVDETIQSCPIDTRRGLYKNIVLSGGST 334
Query: 198 MFKHLDRRIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLAS 377
MFK +R+QRDIK+ VD+R+K +EE S G++K +DVKV+SH MQR+AVWFGG++LAS
Sbjct: 335 MFKDFGKRLQRDIKRAVDYRIKRSEELSQGRIKSKAVDVKVISHHMQRFAVWFGGSMLAS 394
Query: 378 SDDFYTAAHTKKQYDEIGPSICRHNPVFG 464
+ +FY HTK+QYDE+GPSICRHNPVFG
Sbjct: 395 TPEFYKVCHTKQQYDEVGPSICRHNPVFG 423
>sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related protein 3)
Length = 425
Score = 214 bits (544), Expect = 2e-55
Identities = 97/149 (65%), Positives = 122/149 (81%)
Frame = +3
Query: 18 FSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSS 197
F+ DVGYE+FLGPE+FF PEF N +F T ISD +DT+IQ CPID RR LY NIVLSGGS+
Sbjct: 274 FNVDVGYERFLGPEIFFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGST 333
Query: 198 MFKHLDRRIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLAS 377
MFK R++QRD+K++ D RL+++E S G+LKP PIDV+V+SH MQRYAVWFGG++LAS
Sbjct: 334 MFKDFARKLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLAS 393
Query: 378 SDDFYTAAHTKKQYDEIGPSICRHNPVFG 464
+ +FY +HTK +Y E GPSICR+NPVFG
Sbjct: 394 TSEFYQVSHTKAEYMERGPSICRYNPVFG 422
>sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 208 bits (529), Expect = 1e-53
Identities = 95/149 (63%), Positives = 118/149 (79%)
Frame = +3
Query: 18 FSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSS 197
FS+DVGYE+FLGPE+FF PE ++D+ T + VVD IQSCPID RR LY NIVLSGGS+
Sbjct: 267 FSYDVGYERFLGPELFFNPEIASSDYLTPLPKVVDDTIQSCPIDCRRGLYKNIVLSGGST 326
Query: 198 MFKHLDRRIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLAS 377
MFK +R+QRD+K+ VD+R+K +EE S GK+K P+ V V+SH+MQRYAVWFGG++LAS
Sbjct: 327 MFKDFGKRLQRDVKRSVDYRIKRSEELSGGKIKAVPLAVNVISHNMQRYAVWFGGSMLAS 386
Query: 378 SDDFYTAAHTKKQYDEIGPSICRHNPVFG 464
+ +FY HTK QYDEIGPSICR N V G
Sbjct: 387 TPEFYNVCHTKAQYDEIGPSICRFNTVIG 415
>sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
ARP3)
Length = 449
Score = 159 bits (403), Expect = 4e-39
Identities = 79/145 (54%), Positives = 102/145 (70%)
Frame = +3
Query: 27 DVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFK 206
D+GYE+FL PE+FF PE ++DF T + VVD IQ+CPID R+ LYNNIVLSGGS+MFK
Sbjct: 304 DIGYERFLAPEIFFNPEIASSDFLTPLPTVVDQTIQACPIDVRKGLYNNIVLSGGSTMFK 363
Query: 207 HLDRRIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDD 386
RR+QRD+K +V+ R+ +E S K T +DV V+SH QR AVWFGG+LLA + +
Sbjct: 364 DFGRRLQRDLKSIVNNRIAQSELLS--GTKSTGVDVSVISHRKQRNAVWFGGSLLAQTAE 421
Query: 387 FYTAAHTKKQYDEIGPSICRHNPVF 461
F HTKK Y+E GP I R+ +F
Sbjct: 422 FKGYCHTKKDYEEYGPEIVRNFSLF 446
>sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related protein 3)
Length = 439
Score = 157 bits (396), Expect = 3e-38
Identities = 77/146 (52%), Positives = 102/146 (69%)
Frame = +3
Query: 27 DVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFK 206
DVGYE+F+ PE+FF PE ++DF T + VVD VIQS PID RR LY NIVLSGGS+++K
Sbjct: 290 DVGYERFMAPEIFFNPEIYSSDFLTPLPVVVDGVIQSSPIDVRRGLYKNIVLSGGSTLYK 349
Query: 207 HLDRRIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDD 386
RR+QRDIK++VD R+K +E S G K +DV+V++H QR+ WFGG+LL + +
Sbjct: 350 DFGRRLQRDIKQLVDTRIKASEVRS-GGAKSGGLDVQVITHKRQRHGPWFGGSLLGQTPE 408
Query: 387 FYTAAHTKKQYDEIGPSICRHNPVFG 464
F + HTK +Y E GPSI R + G
Sbjct: 409 FRSYCHTKAEYQEYGPSIVRRFALLG 434
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,443,864
Number of Sequences: 369166
Number of extensions: 1528646
Number of successful extensions: 4852
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4317
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)