Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_A03
(314 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24439|ATPO_DROME ATP synthase O subunit, mitochondrial ... 81 7e-16
sp|Q9DB20|ATPO_MOUSE ATP synthase O subunit, mitochondrial ... 69 3e-12
sp|Q5RD23|ATPO_PONPY ATP synthase O subunit, mitochondrial ... 69 3e-12
sp|Q06647|ATPO_RAT ATP synthase O subunit, mitochondrial pr... 68 6e-12
sp|P13621|ATPO_BOVIN ATP synthase O subunit, mitochondrial ... 68 6e-12
sp|P48047|ATPO_HUMAN ATP synthase O subunit, mitochondrial ... 67 1e-11
sp|Q9P602|ATPO_NEUCR ATP synthase subunit 5, mitochondrial ... 60 1e-09
sp|P22778|ATPO_IPOBA ATP synthase delta chain, mitochondria... 58 6e-09
sp|Q96251|ATPO_ARATH ATP synthase delta chain, mitochondria... 58 8e-09
sp|O74190|ATPO_KLULA ATP synthase subunit 5, mitochondrial ... 50 1e-06
>sp|Q24439|ATPO_DROME ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 209
Score = 81.3 bits (199), Expect = 7e-16
Identities = 35/90 (38%), Positives = 61/90 (67%)
Frame = +3
Query: 3 SILSSMDSIFEASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELI 182
+++++ +I A +G V C + TAKP+D + K+ AL+ F+ N+ + + ++D +I
Sbjct: 119 TVINAYKTIMAAHRGEVVCEVVTAKPLDASQSKQLEGALKSFLKGNESLKITSRVDPSII 178
Query: 183 GGATVSIGDKFVDMSVAKKVRMFQDVLERA 272
GG VSIGDK+VDMS+A KV+++ DV++ A
Sbjct: 179 GGLIVSIGDKYVDMSIATKVKLYTDVIQTA 208
>sp|Q9DB20|ATPO_MOUSE ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 213
Score = 69.3 bits (168), Expect = 3e-12
Identities = 33/90 (36%), Positives = 51/90 (56%)
Frame = +3
Query: 6 ILSSMDSIFEASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIG 185
I+S+ +I +G V C +TTA P+D+A E L+ F+S NQ + +E K D ++G
Sbjct: 124 IISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMG 183
Query: 186 GATVSIGDKFVDMSVAKKVRMFQDVLERAL 275
G V IG+K+VDMS K++ + L
Sbjct: 184 GMIVRIGEKYVDMSAKSKIQKLSKAMREML 213
>sp|Q5RD23|ATPO_PONPY ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 213
Score = 68.9 bits (167), Expect = 3e-12
Identities = 31/80 (38%), Positives = 52/80 (65%)
Frame = +3
Query: 6 ILSSMDSIFEASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIG 185
++S+ ++ A +G V C +T+A P++EAT E L+ F+S+ Q + +E K D ++G
Sbjct: 124 VVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILG 183
Query: 186 GATVSIGDKFVDMSVAKKVR 245
G V IG+K+VDMSV K++
Sbjct: 184 GMIVRIGEKYVDMSVKTKIQ 203
>sp|Q06647|ATPO_RAT ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 213
Score = 68.2 bits (165), Expect = 6e-12
Identities = 33/90 (36%), Positives = 50/90 (55%)
Frame = +3
Query: 6 ILSSMDSIFEASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIG 185
++S+ +I +G V C +TTA P+DEA E L F+SK Q + +E K D ++G
Sbjct: 124 VISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMG 183
Query: 186 GATVSIGDKFVDMSVAKKVRMFQDVLERAL 275
G V IG+K+VDMS K++ + L
Sbjct: 184 GMIVRIGEKYVDMSAKSKIQKLSKAMRDLL 213
>sp|P13621|ATPO_BOVIN ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 213
Score = 68.2 bits (165), Expect = 6e-12
Identities = 32/91 (35%), Positives = 52/91 (57%)
Frame = +3
Query: 3 SILSSMDSIFEASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELI 182
+++S+ ++ +G V C +TTA +DE T E L+ F+SK Q + +E KID ++
Sbjct: 123 AVISAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIM 182
Query: 183 GGATVSIGDKFVDMSVAKKVRMFQDVLERAL 275
GG V IG+K+VDMS K++ + L
Sbjct: 183 GGMIVRIGEKYVDMSAKTKIQKLSRAMREIL 213
>sp|P48047|ATPO_HUMAN ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 213
Score = 67.4 bits (163), Expect = 1e-11
Identities = 30/80 (37%), Positives = 51/80 (63%)
Frame = +3
Query: 6 ILSSMDSIFEASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIG 185
++S+ ++ +G V C +T+A P++EAT E L+ F+S+ Q + +E K D ++G
Sbjct: 124 VVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILG 183
Query: 186 GATVSIGDKFVDMSVAKKVR 245
G V IG+K+VDMSV K++
Sbjct: 184 GMIVRIGEKYVDMSVKTKIQ 203
>sp|Q9P602|ATPO_NEUCR ATP synthase subunit 5, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP) (ATP synthase
chain 5)
Length = 220
Score = 60.5 bits (145), Expect = 1e-09
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Frame = +3
Query: 3 SILSSMDSIFEASKGNVRCIITTAKPIDEAT--EKEFIAALQLFVSKNQKIIVEKKIDKE 176
S+++ + A++G V ++T+A+P+D T E A +V +K+ V K++ +
Sbjct: 128 SVVAKFSELMSAARGEVEMVVTSAQPLDNKTLNRLESAVAKSPYVGSGKKLKVTNKVNAD 187
Query: 177 LIGGATVSIGDKFVDMSVAKKVRMFQDVLERAL 275
+IGG V IG++ +D+SV+ K+ +L AL
Sbjct: 188 IIGGLVVEIGERTIDLSVSSKIAKMNKLLSEAL 220
>sp|P22778|ATPO_IPOBA ATP synthase delta chain, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 244
Score = 58.2 bits (139), Expect = 6e-09
Identities = 29/91 (31%), Positives = 46/91 (50%)
Frame = +3
Query: 6 ILSSMDSIFEASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIG 185
I+ + A +G V+ +TT P+ EKE A LQ V + + + +E+KID ++G
Sbjct: 153 IVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILG 212
Query: 186 GATVSIGDKFVDMSVAKKVRMFQDVLERALS 278
G V G K DMS+ + R + L L+
Sbjct: 213 GLVVEFGQKVFDMSIRTRARQMERFLREPLN 243
>sp|Q96251|ATPO_ARATH ATP synthase delta chain, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 238
Score = 57.8 bits (138), Expect = 8e-09
Identities = 28/87 (32%), Positives = 47/87 (54%)
Frame = +3
Query: 3 SILSSMDSIFEASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELI 182
+I+ + A +G+V+ ++TT P+ A EKE LQ + +KI VE+KID +
Sbjct: 143 AIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIY 202
Query: 183 GGATVSIGDKFVDMSVAKKVRMFQDVL 263
GG V K +DMS+ + + + +L
Sbjct: 203 GGLIVEFQQKVLDMSIRTRAQQMERLL 229
>sp|O74190|ATPO_KLULA ATP synthase subunit 5, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP) (ATP synthase
chain 5)
Length = 206
Score = 50.4 bits (119), Expect = 1e-06
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = +3
Query: 6 ILSSMDSIFEASKGNVRCIITTAKPIDEATEK--EFIAALQLFVSKNQKIIVEKKIDKEL 179
+ S + +A G V+ +TTA+P+D K E A V K + + +E + E+
Sbjct: 115 VTSQFSKLTDAYHGLVQATVTTAQPLDSKLFKRVEKALAASSLVGKGKSLKLENVVKPEI 174
Query: 180 IGGATVSIGDKFVDMSVAKKVRMFQDVLERAL 275
GG V + D+ VD+S+A ++ VL A+
Sbjct: 175 QGGLIVEVSDRTVDLSIASRINKLNQVLREAI 206
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,093,864
Number of Sequences: 369166
Number of extensions: 459296
Number of successful extensions: 1336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)