Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_A02
(760 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18067|RAB7_CANFA Ras-related protein Rab-7 304 1e-82
sp|P51150|RAB7_MOUSE Ras-related protein Rab-7 >gi|1709999|... 304 2e-82
sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related p... 303 3e-82
sp|O97572|RAB7_RABIT Ras-related protein Rab-7 293 3e-79
sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7 276 4e-74
sp|P36411|RAB7_DICDI Ras-related protein Rab7 274 2e-73
sp|O24461|RAB7_PRUAR Ras-related protein Rab7 261 1e-69
sp|O94655|YPT7_SCHPO Ras-related protein ypt7 259 7e-69
sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 258 2e-68
sp|P31022|RAB7_PEA Ras-related protein Rab7 257 3e-68
>sp|P18067|RAB7_CANFA Ras-related protein Rab-7
Length = 207
Score = 304 bits (779), Expect = 1e-82
Identities = 147/207 (71%), Positives = 169/207 (81%), Gaps = 1/207 (0%)
Frame = +2
Query: 41 MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 220
M SR GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+V+VDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 221 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 400
IWDTAGQERFQSLGVAFYRGADCCVLV+DVT P TF TLDSWRDEFLIQ+SPRDP++FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 401 VVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENET 580
VV+GNK+DL R V T+RAQ WC SK +I YFE SAKEA+NVEQAFQ +AR AL QE E
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 581 DIISEFPDKINL-ANNNPQNQSSSCTC 658
++ +EFP+ I L N+ + + SC+C
Sbjct: 181 ELYNEFPEPIKLDKNDRAKTSAESCSC 207
>sp|P51150|RAB7_MOUSE Ras-related protein Rab-7
sp|P51149|RAB7_HUMAN Ras-related protein Rab-7
Length = 207
Score = 304 bits (778), Expect = 2e-82
Identities = 148/207 (71%), Positives = 169/207 (81%), Gaps = 1/207 (0%)
Frame = +2
Query: 41 MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 220
M SR GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+V+VDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 221 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 400
IWDTAGQERFQSLGVAFYRGADCCVLV+DVT P TF TLDSWRDEFLIQ+SPRDP++FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 401 VVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENET 580
VV+GNK+DL R V T+RAQ WC SK +I YFE SAKEA+NVEQAFQ +AR AL QE E
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 581 DIISEFPDKINLANNNPQNQSS-SCTC 658
++ +EFP+ I L N+ S+ SC+C
Sbjct: 181 ELYNEFPEPIKLDKNDRAKASAESCSC 207
>sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related protein P23) (RAS-related
protein BRL-RAS)
Length = 207
Score = 303 bits (777), Expect = 3e-82
Identities = 148/207 (71%), Positives = 168/207 (81%), Gaps = 1/207 (0%)
Frame = +2
Query: 41 MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 220
M SR GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+V+VDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 221 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 400
IWDTAGQERFQSLGVAFYRGADCCVLV+DVT P TF TLDSWRDEFLIQ+SPRDP++FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 401 VVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENET 580
VV+GNK+DL R V T+RAQ WC SK +I YFE SAKEA+NVEQAFQ +AR AL QE E
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 581 DIISEFPDKINLANNNPQNQSS-SCTC 658
++ +EFP+ I L N S+ SC+C
Sbjct: 181 ELYNEFPEPIKLDKNERAKASAESCSC 207
>sp|O97572|RAB7_RABIT Ras-related protein Rab-7
Length = 207
Score = 293 bits (750), Expect = 3e-79
Identities = 143/207 (69%), Positives = 166/207 (80%), Gaps = 1/207 (0%)
Frame = +2
Query: 41 MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 220
M SR GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+V+VDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 221 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 400
IWDTAGQERFQSL VAFYRGADCCVLV+DVT P TF TLDSWR EFLIQ+SPRDP++FPF
Sbjct: 61 IWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPF 120
Query: 401 VVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENET 580
VV+GNK+DL R V T+RAQ W SK +I YFE SAKEA+NVEQAFQ +AR AL QE E
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 581 DIISEFPDKINL-ANNNPQNQSSSCTC 658
++ +EFP+ + L N+ + + SC+C
Sbjct: 181 ELYNEFPEPMKLDKNDRAKTSAESCSC 207
>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7
Length = 205
Score = 276 bits (706), Expect = 4e-74
Identities = 137/208 (65%), Positives = 162/208 (77%), Gaps = 2/208 (0%)
Frame = +2
Query: 41 MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 220
M+SR GDSGVGKTSLMNQYVNKKF+ YKATIGADFLT++V+VDDR VTMQ
Sbjct: 1 MSSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVTMQ 60
Query: 221 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 400
+WDTAGQERFQSLGVAFYRGADCCVLVYDV K+F LDSWRDEFLIQ+SPRDPD+FPF
Sbjct: 61 LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPF 120
Query: 401 VVIGNKVDLGE--RNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQEN 574
VV+GNK+D+ E R ++T+RA +CQSKG+I YFE SAKEA+NVEQAF+ +AR AL QE
Sbjct: 121 VVLGNKIDMEESKRVISTKRAMTFCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQEE 180
Query: 575 ETDIISEFPDKINLANNNPQNQSSSCTC 658
+ +F D IN+ + +N C C
Sbjct: 181 SEEFSGDFQDPINI---HIENDRDGCAC 205
>sp|P36411|RAB7_DICDI Ras-related protein Rab7
Length = 203
Score = 274 bits (700), Expect = 2e-73
Identities = 138/205 (67%), Positives = 160/205 (78%), Gaps = 1/205 (0%)
Frame = +2
Query: 41 MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 220
MA++ GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+++VDDRVVTMQ
Sbjct: 1 MATKKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQ 60
Query: 221 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 400
IWDTAGQERFQSLGVAFYRGADCCVL YDV + KTF LDSWRDEFLIQ+ PRDPD+FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPF 120
Query: 401 VVIGNKVDL-GERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENE 577
VV+GNK+DL +R V+ +RA WCQSKG+I YFE SAKEA+NVEQAFQ +AR A+ E+
Sbjct: 121 VVLGNKIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLED- 179
Query: 578 TDIISEFPDKINLANNNPQNQSSSC 652
++ P I + PQ S C
Sbjct: 180 -GLVFPIPTNIQVI-PEPQPAKSGC 202
>sp|O24461|RAB7_PRUAR Ras-related protein Rab7
Length = 207
Score = 261 bits (667), Expect = 1e-69
Identities = 129/209 (61%), Positives = 159/209 (76%), Gaps = 3/209 (1%)
Frame = +2
Query: 41 MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 220
MASR GDSGVGKTSLMNQYVN+KF+NQYKATIGADFLTK+V +DR+ T+Q
Sbjct: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
Query: 221 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 400
IWDTAGQERFQSLGVAFYRGADCCVLVYDV + K+F L++WR+EFLIQ++P DP++FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPF 120
Query: 401 VVIGNKVDL---GERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQE 571
VV+GNK+D+ R V+ ++A+ WC SKG+I YFE SAKE NV+ AFQ +A+ AL E
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNE 180
Query: 572 NETDIISEFPDKINLANNNPQNQSSSCTC 658
E +I PD I++A Q +SS C C
Sbjct: 181 PEEEIY--LPDTIDVAGGGRQQRSSGCEC 207
>sp|O94655|YPT7_SCHPO Ras-related protein ypt7
Length = 205
Score = 259 bits (661), Expect = 7e-69
Identities = 126/208 (60%), Positives = 163/208 (78%), Gaps = 2/208 (0%)
Frame = +2
Query: 41 MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 220
MA + G+SGVGKTS+MNQYVN+KF+ YKATIGADFLTK+V+VDD+VVT+Q
Sbjct: 1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQ 60
Query: 221 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 400
+WDTAGQERFQSLGVAFYRGADCCVLVYDV K+F TLDSWRDEFLIQ+SP +P+ FPF
Sbjct: 61 LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPF 120
Query: 401 VVIGNKVDLGE--RNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQEN 574
+++GNKVD+ E R V+ +A +CQ++G+I YFE SAKEA+NV++AF+ VA+ AL +
Sbjct: 121 ILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMD 180
Query: 575 ETDIISEFPDKINLANNNPQNQSSSCTC 658
DI ++F D I+L + ++Q +SC C
Sbjct: 181 SDDIAADFTDPIHL---DMESQKTSCYC 205
>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7
Length = 207
Score = 258 bits (658), Expect = 2e-68
Identities = 128/209 (61%), Positives = 159/209 (76%), Gaps = 3/209 (1%)
Frame = +2
Query: 41 MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 220
MASR GDSGVGKTSLMNQYVN+KF+NQYKATIGADFLTK+V DDR+ T+Q
Sbjct: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQ 60
Query: 221 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 400
IWDTAGQERFQSLGVAFYRGADCCVLV+DV + K+F L++WR+EFLIQ+SP DP++FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
Query: 401 VVIGNKVDL---GERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQE 571
VV+GNKVD+ R V+ ++A+ WC SKG+I YFE SAKE NV+ AF+ +AR AL E
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNE 180
Query: 572 NETDIISEFPDKINLANNNPQNQSSSCTC 658
E +I P+ I++A+ +S+ C C
Sbjct: 181 PEEEIY--LPETIDVASGGRPQRSTGCEC 207
>sp|P31022|RAB7_PEA Ras-related protein Rab7
Length = 206
Score = 257 bits (656), Expect = 3e-68
Identities = 127/209 (60%), Positives = 160/209 (76%), Gaps = 3/209 (1%)
Frame = +2
Query: 41 MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 220
M SR GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+V +DR+ T+Q
Sbjct: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
Query: 221 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 400
IWDTAGQERFQSLGVAFYRGADCCVLVYDV K+F L++WR+EFLIQ++P DP++FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPF 120
Query: 401 VVIGNKVDL---GERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQE 571
VVIGNK+D+ R V+ ++A+ WC +KG+I YFE SAKE +NVE+AFQ +A+ AL
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSG 180
Query: 572 NETDIISEFPDKINLANNNPQNQSSSCTC 658
E ++ PD I++ N++ Q +S+ C C
Sbjct: 181 EEEELY--LPDTIDVGNSS-QPRSTGCEC 206
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,487,437
Number of Sequences: 369166
Number of extensions: 1507628
Number of successful extensions: 4709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4112
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)