Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_A01
(603 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P74148|Y1388_SYNY3 Hypothetical protein sll1388 51 2e-06
sp|P72745|Y1101_SYNY3 Hypothetical protein slr1101 44 2e-04
sp|P64922|YK28_MYCBO Hypothetical protein Mb2028c >gi|54042... 42 0.001
sp|P42297|YXIE_BACSU Hypothetical protein yxiE precursor 40 0.006
sp|Q57951|Y531_METJA Hypothetical protein MJ0531 38 0.023
sp|P10506|BYR1_SCHPO Protein kinase byr1 (MAPK kinase) (MAPKK) 35 0.19
sp|Q57997|Y577_METJA Protein MJ0577 34 0.33
sp|O07552|NHAX_BACSU Stress response protein nhaX 32 1.2
sp|P72817|Y1654_SYNY3 Hypothetical protein sll1654 32 1.2
sp|Q8PUY5|MRE11_METMA DNA double-strand break repair protei... 32 1.6
>sp|P74148|Y1388_SYNY3 Hypothetical protein sll1388
Length = 154
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +1
Query: 256 LQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLVHAVEENNADLVVMGSRGLNL 435
L++ Q EA+ ++Q +++ + C W +G P + + +ADLVV+G RGL
Sbjct: 69 LEEQQTEAREWLQSIVQQVQEDGVACEWDVKVGEPGRWIRDMAKNWDADLVVLGRRGLKG 128
Query: 436 FRRTLVGSVSTYVTQH 483
+GSVS+YV H
Sbjct: 129 LAEVFLGSVSSYVIHH 144
>sp|P72745|Y1101_SYNY3 Hypothetical protein slr1101
Length = 108
Score = 44.3 bits (103), Expect = 2e-04
Identities = 24/77 (31%), Positives = 38/77 (49%)
Frame = +1
Query: 253 QLQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLVHAVEENNADLVVMGSRGLN 432
Q Q + E K +Q D++C + LGSP + +++N+D++V+G RG
Sbjct: 20 QWQTFEQEGLDTLEKRRQQALALDIECQAEQILGSPGKIICQRAKQDNSDIIVVGHRGRW 79
Query: 433 LFRRTLVGSVSTYVTQH 483
L+GSV YV H
Sbjct: 80 GLSEILLGSVGNYVFHH 96
>sp|P64922|YK28_MYCBO Hypothetical protein Mb2028c
sp|P64921|YK05_MYCTU Hypothetical protein Rv2005c/MT2061
Length = 295
Score = 42.4 bits (98), Expect = 0.001
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 2/140 (1%)
Frame = +1
Query: 55 PINKRTVVIGIDGSKYSDDAFNWFQNHYAQPNTDEIILHHSICPSASVSAPIFKGIPTNP 234
P + VV+G+DGS SD A W A N ++H V+A + P
Sbjct: 4 PRKQHGVVVGVDGSLESDAAACWGATDAAMRNIPLTVVH-------VVNADVATWPPMPY 56
Query: 235 DKDYAVQLQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSL--GSPNLNLVHAVEENNADLV 408
+ + V + + K ++ D K S K+ L +P +V N A++V
Sbjct: 57 PETWGVWQEDEGRQIVANAVKLAKEAVGADRKLSVKSELVFSTPVPTMVEI--SNEAEMV 114
Query: 409 VMGSRGLNLFRRTLVGSVST 468
V+GS G R L+GSVS+
Sbjct: 115 VLGSSGRGALARGLLGSVSS 134
>sp|P42297|YXIE_BACSU Hypothetical protein yxiE precursor
Length = 148
Score = 39.7 bits (91), Expect = 0.006
Identities = 32/136 (23%), Positives = 63/136 (46%)
Frame = +1
Query: 73 VVIGIDGSKYSDDAFNWFQNHYAQPNTDEIILHHSICPSASVSAPIFKGIPTNPDKDYAV 252
+++ IDGS S A + H A+ E+ + H + A V+ GI P+
Sbjct: 5 MLVAIDGSDMSAKALD-AAVHLAKEQQAELSILH-VGREAVVTTSSLTGIVYVPEHFIDE 62
Query: 253 QLQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLVHAVEENNADLVVMGSRGLN 432
+++ E + E+ + ++ + G P +++ +E L+V+GSRG++
Sbjct: 63 IRNEVKKEGLKILENAKEKAAEKGVQAETIYANGEPAHEILNHAKEKGVSLIVVGSRGIS 122
Query: 433 LFRRTLVGSVSTYVTQ 480
+ ++GSVS V+Q
Sbjct: 123 GLKEMMLGSVSHKVSQ 138
>sp|Q57951|Y531_METJA Hypothetical protein MJ0531
Length = 170
Score = 37.7 bits (86), Expect = 0.023
Identities = 35/139 (25%), Positives = 60/139 (43%)
Frame = +1
Query: 67 RTVVIGIDGSKYSDDAFNWFQNHYAQPNTDEIILHHSICPSASVSAPIFKGIPTNPDKDY 246
+ +VI DGS S +A N + + + ++ V F G+P +
Sbjct: 27 KKIVIPTDGSDVSLEAAKHAINIAKEFDAEVYAIY-------VVDVSPFVGLPAEGSWEL 79
Query: 247 AVQLQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLVHAVEENNADLVVMGSRG 426
+L L+ E Q K + ++ +K + G P +V E+ ADL+VMG+ G
Sbjct: 80 ISEL--LKEEGQEALKKVKKMAEEWGVKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTG 137
Query: 427 LNLFRRTLVGSVSTYVTQH 483
R L+GSV+ V ++
Sbjct: 138 KTGLERILLGSVAERVIKN 156
>sp|P10506|BYR1_SCHPO Protein kinase byr1 (MAPK kinase) (MAPKK)
Length = 340
Score = 34.7 bits (78), Expect = 0.19
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Frame = +1
Query: 214 KGIPTNP-------DKDYAVQLQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNL 372
KG+ NP D D+ +L Q ++ FMEQC + + +W + L + +L +
Sbjct: 9 KGLVLNPNASVKSSDNDHKEELINNQKSFESNVEAFMEQCAHMNRRPAWISDLDNSSLEV 68
Query: 373 V-HAVEENNADLVVMGSRGLNLFRRTL-VGSVS 465
V H E N + ++ R + + R+T+ VGS S
Sbjct: 69 VRHLGEGNGGAVSLVKHRNIFMARKTVYVGSDS 101
>sp|Q57997|Y577_METJA Protein MJ0577
Length = 162
Score = 33.9 bits (76), Expect = 0.33
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 262 KLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLVHAVEENNADLVVMGSRGLNLFR 441
KL EA+ ++ + K +G P+ +V E+ D+++MGS G +
Sbjct: 76 KLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLK 135
Query: 442 RTLVGSVSTYV 474
L+GSV+ V
Sbjct: 136 EILLGSVTENV 146
>sp|O07552|NHAX_BACSU Stress response protein nhaX
Length = 166
Score = 32.0 bits (71), Expect = 1.2
Identities = 31/150 (20%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Frame = +1
Query: 37 ILYDKMPINKRTVVIGIDGSKYSDDAFNWFQNHYAQPNTDEIILHHSICPSASVSA---- 204
+ +D +K+ ++ ID +K + A +H + N I ++ +S
Sbjct: 9 VAFDGSENSKKALLTAIDLAKTVNAAITVAHSHDMKDNQTVIDPPRPAAEASYISGGMTS 68
Query: 205 ---PIFKGIPTNPDKDYAVQLQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLV 375
P+ + + Y + +++ AEA+ + EQ D+ G P +++
Sbjct: 69 VPDPLISDVTSPEPMIYEDRTEEVIAEARMM---LNEQQADGDIDILE----GDPAESII 121
Query: 376 HAVEENNADLVVMGSRGLNLFRRTLVGSVS 465
+AD++V GSR N ++ + GSVS
Sbjct: 122 EHANRISADMIVTGSRDQNRLKKLIFGSVS 151
>sp|P72817|Y1654_SYNY3 Hypothetical protein sll1654
Length = 157
Score = 32.0 bits (71), Expect = 1.2
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Frame = +1
Query: 67 RTVVIGIDGSKYSDDAFNWFQNHYAQPNTDEIILHHSICPSASVSAPIFKGIPTNPDKDY 246
+T++ +D S+ + DA AQ D + +H S + + + P D +
Sbjct: 24 KTILFPLDRSREARDA--------AQMVADLVKIHQS----QLILLSVVEKNPPGQDHE- 70
Query: 247 AVQLQKLQAEAQTLEAKFMEQCKKNDLKCSWKT--SLGSPNLNLVHAVEENNADLVVMGS 420
A + +A A+ LEA Q + + KT G + + +E NADL+VMG
Sbjct: 71 AHGMDSPEAVAKLLEAA---QAVFSQQGIATKTIEREGMASFTICDVADEVNADLIVMGC 127
Query: 421 RGLNLFRRTLVGSVSTYV 474
RGL L + SV+ V
Sbjct: 128 RGLGLTTEGVAESVTARV 145
>sp|Q8PUY5|MRE11_METMA DNA double-strand break repair protein mre11
Length = 617
Score = 31.6 bits (70), Expect = 1.6
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +1
Query: 232 PDKDYAVQLQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLVHAVEENNADLVV 411
PD D A ++ L +A + + +K + SW T GS N E + ++
Sbjct: 167 PDWDCAEVIENLPFKADAVLLGDYHEYEKIKVGESWVTYSGSTERNSASEKEPRSYSIIT 226
Query: 412 MGSRGLNLFRRTL 450
+ GL + RRT+
Sbjct: 227 LSGEGLEISRRTI 239
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,546,615
Number of Sequences: 369166
Number of extensions: 1082712
Number of successful extensions: 3013
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3011
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)