Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_P14-2
(155 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00277|GPX1_SCHMA Glutathione peroxidase (GPX) 73 2e-13
sp|O02621|GPX1_CAEEL Probable glutathione peroxidase F26E4.12 57 2e-08
sp|O24296|GPX1_PEA Phospholipid hydroperoxide glutathione p... 56 2e-08
sp|Q9LYB4|GPX3_ARATH Probable glutathione peroxidase At3g63080 56 3e-08
sp|O24031|GPX4_LYCES Probable phospholipid hydroperoxide gl... 55 4e-08
sp|P30708|GPX4_NICSY Probable phospholipid hydroperoxide gl... 55 5e-08
sp|Q9LEF0|GPX4_MESCR Probable phospholipid hydroperoxide gl... 55 5e-08
sp|O49069|GPX4_GOSHI Probable phospholipid hydroperoxide gl... 55 5e-08
sp|O23968|GPX4_HELAN Probable phospholipid hydroperoxide gl... 55 7e-08
sp|Q9FXS3|GPX4_TOBAC Probable phospholipid hydroperoxide gl... 54 9e-08
>sp|Q00277|GPX1_SCHMA Glutathione peroxidase (GPX)
Length = 169
Score = 73.2 bits (178), Expect = 2e-13
Identities = 35/51 (68%), Positives = 40/51 (78%)
Frame = +1
Query: 1 GEEISLSKYKGNVVLIVNVACK*GATAKNYNQLQELHKLLADKGLRILGFP 153
G ++SL KY+G+V LIVNVACK GAT KNY QLQE+H L KGLRIL FP
Sbjct: 21 GVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFP 71
>sp|O02621|GPX1_CAEEL Probable glutathione peroxidase F26E4.12
Length = 163
Score = 56.6 bits (135), Expect = 2e-08
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1
Query: 1 GEEISLSKYKGNVVLIVNVACK*GATAKNYNQLQELHKLLADKGLRILGFP 153
G+++SLS YKG V++IVNVA + G T KNY QL+EL + GL +L FP
Sbjct: 14 GDDVSLSDYKGKVLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLAFP 64
>sp|O24296|GPX1_PEA Phospholipid hydroperoxide glutathione peroxidase, chloroplast
precursor (PHGPx)
Length = 236
Score = 56.2 bits (134), Expect = 2e-08
Identities = 25/50 (50%), Positives = 37/50 (74%)
Frame = +1
Query: 4 EEISLSKYKGNVVLIVNVACK*GATAKNYNQLQELHKLLADKGLRILGFP 153
+++SLSK+KG V+LIVNVA + G T+ NY +L L++ +KGL +L FP
Sbjct: 90 KDVSLSKFKGKVLLIVNVASRCGLTSSNYTELSHLYENFKNKGLEVLAFP 139
>sp|Q9LYB4|GPX3_ARATH Probable glutathione peroxidase At3g63080
Length = 173
Score = 55.8 bits (133), Expect = 3e-08
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +1
Query: 1 GEEISLSKYKGNVVLIVNVACK*GATAKNYNQLQELHKLLADKGLRILGFP 153
G+E+ LS Y+G V+L+VNVA K G T NY QL EL++ D+G +L FP
Sbjct: 24 GKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVLAFP 74
>sp|O24031|GPX4_LYCES Probable phospholipid hydroperoxide glutathione peroxidase (PHGPx)
Length = 169
Score = 55.5 bits (132), Expect = 4e-08
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +1
Query: 1 GEEISLSKYKGNVVLIVNVACK*GATAKNYNQLQELHKLLADKGLRILGFP 153
G+++ LS YKG V++IVNVA + G T NY + EL+K D+GL IL FP
Sbjct: 21 GKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKKYKDQGLEILAFP 71
>sp|P30708|GPX4_NICSY Probable phospholipid hydroperoxide glutathione peroxidase (PHGPx)
(6P229)
Length = 169
Score = 55.1 bits (131), Expect = 5e-08
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +1
Query: 1 GEEISLSKYKGNVVLIVNVACK*GATAKNYNQLQELHKLLADKGLRILGFP 153
G ++ LS YKG V++IVNVA + G T NY L E++K D+GL IL FP
Sbjct: 21 GNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFP 71
>sp|Q9LEF0|GPX4_MESCR Probable phospholipid hydroperoxide glutathione peroxidase (PHGPx)
Length = 170
Score = 55.1 bits (131), Expect = 5e-08
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = +1
Query: 1 GEEISLSKYKGNVVLIVNVACK*GATAKNYNQLQELHKLLADKGLRILGFP 153
G ++ LS YKG V+LIVNVA + G T NY +L +L++ DKGL IL FP
Sbjct: 22 GNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEILAFP 72
>sp|O49069|GPX4_GOSHI Probable phospholipid hydroperoxide glutathione peroxidase (PHGPx)
Length = 170
Score = 55.1 bits (131), Expect = 5e-08
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +1
Query: 1 GEEISLSKYKGNVVLIVNVACK*GATAKNYNQLQELHKLLADKGLRILGFP 153
G ++ LS YKG V++IVNVA + G T NY L E++K D+GL IL FP
Sbjct: 21 GNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFP 71
>sp|O23968|GPX4_HELAN Probable phospholipid hydroperoxide glutathione peroxidase (PHGPx)
(Glutathione peroxidase 2)
Length = 180
Score = 54.7 bits (130), Expect = 7e-08
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +1
Query: 1 GEEISLSKYKGNVVLIVNVACK*GATAKNYNQLQELHKLLADKGLRILGFP 153
G+++ LSKYKG V+LIVNVA + G T NY +L L++ D+G IL FP
Sbjct: 32 GQDVELSKYKGKVLLIVNVASQCGFTNSNYPELTTLYQKYKDQGFEILAFP 82
>sp|Q9FXS3|GPX4_TOBAC Probable phospholipid hydroperoxide glutathione peroxidase (PHGPx)
(Nt-SubC08)
Length = 169
Score = 54.3 bits (129), Expect = 9e-08
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +1
Query: 1 GEEISLSKYKGNVVLIVNVACK*GATAKNYNQLQELHKLLADKGLRILGFP 153
G ++ LS YKG V++IVNVA + G T NY + E++K D+GL IL FP
Sbjct: 21 GNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKKYKDQGLEILAFP 71
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,474,557
Number of Sequences: 369166
Number of extensions: 249574
Number of successful extensions: 689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 68,354,980
effective HSP length: 24
effective length of database: 63,921,340
effective search space used: 1725876180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)