Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_P14-1
(650 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03410|SYCP1_RAT Synaptonemal complex protein 1 (SCP-1 p... 40 0.004
sp|Q62209|SYCP1_MOUSE Synaptonemal complex protein 1 (SCP-1... 39 0.015
sp|P25386|USO1_YEAST Intracellular protein transport protei... 39 0.015
sp|P22311|PU91_SCICO Puff II/9-1 protein precursor 38 0.020
sp|Q9JMH9|MY18A_MOUSE Myosin-18A (Myosin XVIIIa) (Myosin co... 37 0.034
sp|Q92614|MY18A_HUMAN Myosin-18A (Myosin XVIIIa) (Myosin co... 37 0.044
sp|P49454|CENPF_HUMAN CENP-F kinetochore protein (Centromer... 37 0.044
sp|Q5W0B1|CM007_HUMAN Protein C13orf7 37 0.044
sp|Q5RD97|CM007_PONPY Protein C13orf7 homolog 37 0.044
sp|Q02455|MLP1_YEAST Protein MLP1 (Myosin-like protein 1) 37 0.058
>sp|Q03410|SYCP1_RAT Synaptonemal complex protein 1 (SCP-1 protein)
Length = 997
Score = 40.4 bits (93), Expect = 0.004
Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 17/148 (11%)
Frame = +3
Query: 189 TMAVLQKL--TDKLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTISGLQEEIEKLRTKN 362
T L++L T++ + N+ + + E KK+ E +E + + E+E+L+T
Sbjct: 384 TTCTLEELLRTEQQRLENNEDQLKLITMELQKKSSE--LEEMTKFKNNKEVELEELKTI- 440
Query: 363 RILQDQLLLDPFNELLNVASE------DSTQVISEKSKQINDLQRQLHLTK-------KQ 503
+ +DQ LLD ++ +A E + T ++ + K+I+DL+ Q+ +TK KQ
Sbjct: 441 -LAEDQKLLDEKKQVEKLAEELQGKEQELTFLLQTREKEIHDLEVQVTVTKTSEEHYLKQ 499
Query: 504 INEL--TIKHEQCQNERLLSNSHVSLSE 581
+ E+ ++ E+ +N L +NS + L E
Sbjct: 500 VEEMKTELEKEKLKNIELTANSDMLLLE 527
>sp|Q62209|SYCP1_MOUSE Synaptonemal complex protein 1 (SCP-1 protein)
Length = 993
Score = 38.5 bits (88), Expect = 0.015
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 15/98 (15%)
Frame = +3
Query: 333 EEIEKLRTKNRILQDQLLLDPFNELLNVASE------DSTQVISEKSKQINDLQRQLHLT 494
+E+E KN + +DQ LLD ++ +A E + T ++ + K+++DLQ Q+ +T
Sbjct: 426 KEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVT 485
Query: 495 K-------KQINEL--TIKHEQCQNERLLSNSHVSLSE 581
K KQ+ E+ ++ E+ +N L ++ + L E
Sbjct: 486 KTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLLE 523
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
Length = 1790
Score = 38.5 bits (88), Expect = 0.015
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Frame = +3
Query: 201 LQKLTDKLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTISGLQEEIEKLRTKNRILQDQ 380
L L +K+ + + F + +KNIE + K TIS L++ E++ +K+ +D+
Sbjct: 996 LSNLQNKIDSMSQEKENFQIERGSIEKNIEQL----KKTISDLEQTKEEIISKSDSSKDE 1051
Query: 381 L-----LLDPFNELLNVASEDSTQVISEKSKQINDLQRQLHLTKKQINELTIKHEQC--- 536
LL E A++++ ISE +K +L+ +L K NEL K E
Sbjct: 1052 YESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKA 1111
Query: 537 -----QNERLLSNSHVSLSEPST 590
+NE L + L + +T
Sbjct: 1112 LKEVKENEEHLKEEKIQLEKEAT 1134
Score = 30.4 bits (67), Expect = 4.2
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Frame = +3
Query: 201 LQKLTDKLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTISGLQEEIEKLRTKNRILQDQ 380
+ +L DKLK S D N K +E ES K ++EE++ T+ +I ++
Sbjct: 1274 VSELEDKLKASEDKN----------SKYLELQKESEK-----IKEELDAKTTELKIQLEK 1318
Query: 381 LLLDPFNELLNVASEDSTQVISEKSKQINDLQRQL-HLTKKQINELTIKHEQCQNERLLS 557
+ L+ A E S +S K ++ ++ +K NE+ IK++ + ER L
Sbjct: 1319 I------TNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLL 1372
Query: 558 N 560
N
Sbjct: 1373 N 1373
>sp|P22311|PU91_SCICO Puff II/9-1 protein precursor
Length = 286
Score = 38.1 bits (87), Expect = 0.020
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Frame = +3
Query: 270 NCK-KNIEFI--MESYKLTISGLQEEIEKLRTKNRILQDQLLLDPFNELLNVASEDSTQV 440
NCK +N + + +E TI+ LQEE+E+ R + R LQ Q LD N+ L + + +
Sbjct: 140 NCKAENAKLLKKIEELNCTITQLQEELEQCRARERDLQCQ--LDECNKKLTICNNE---- 193
Query: 441 ISEKSKQINDLQRQLHLTKKQINELTIKHEQCQN 542
+ KQ +L+ ++ +I L ++ C+N
Sbjct: 194 LIACRKQQEELRCEIERLNAEIKRLEAQNAACEN 227
>sp|Q9JMH9|MY18A_MOUSE Myosin-18A (Myosin XVIIIa) (Myosin containing PDZ domain) (Molecule
associated with JAK3 N-terminus) (MAJN)
Length = 2035
Score = 37.4 bits (85), Expect = 0.034
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Frame = +3
Query: 219 KLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTI-------SGLQEEIEKLRTKNRILQD 377
+LK + ++F + +K +E ME L I + L+E++ +L+ + +Q+
Sbjct: 1683 QLKNQLEESEFTCAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQN 1742
Query: 378 QLLLDP--FNELLNVASEDSTQVISEKSKQINDLQRQLHLTKKQINELTIKHEQCQNE 545
+L D NEL+ Q S Q+NDLQ Q+ + K+ EL K + Q++
Sbjct: 1743 RLEEDQEDMNELMKKHKAAVAQA-SRDMAQMNDLQAQIEESNKEKQELQEKLQALQSQ 1799
>sp|Q92614|MY18A_HUMAN Myosin-18A (Myosin XVIIIa) (Myosin containing PDZ domain) (Molecule
associated with JAK3 N-terminus) (MAJN)
Length = 2054
Score = 37.0 bits (84), Expect = 0.044
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Frame = +3
Query: 219 KLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTI-------SGLQEEIEKLRTKNRILQD 377
+LK + ++F + +K +E +E L I + L+E++ +L+ + +Q+
Sbjct: 1687 QLKNQLEESEFTCAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQN 1746
Query: 378 QLLLDP--FNELLNVASEDSTQVISEKSKQINDLQRQLHLTKKQINELTIKHEQCQNE 545
+L D NEL+ Q S QINDLQ QL K+ EL K + Q++
Sbjct: 1747 RLEEDQEDMNELMKKHKAAVAQA-SRDLAQINDLQAQLEEANKEKQELQEKLQALQSQ 1803
>sp|P49454|CENPF_HUMAN CENP-F kinetochore protein (Centromere protein F) (Mitosin) (AH
antigen)
Length = 3210
Score = 37.0 bits (84), Expect = 0.044
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Frame = +3
Query: 210 LTDKLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTI---SGLQEEIEKLRTKNRILQDQ 380
+ +KLK ND EN ++ ++ E+ +L I + E+E L+T+ +
Sbjct: 2234 IAEKLKERERENDSLKDKVENLERELQMSEENQELVILDAENSKAEVETLKTQIEEMARS 2293
Query: 381 LLLDPFNEL-LNVASEDSTQVISEKSKQINDLQRQLH-----LTKKQINELTIKHEQCQN 542
L + + + L E+ T+ I EK Q+++L + L L +K+ E+ IK E
Sbjct: 2294 LKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFKSLLEEKEQAEIQIKEESKTA 2353
Query: 543 ERLLSNSHVSLSE 581
+L N L+E
Sbjct: 2354 VEMLQNQLKELNE 2366
Score = 30.8 bits (68), Expect = 3.2
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Frame = +3
Query: 276 KKNIEFIMESYKLTISGLQEEIEKLRTKNRIL--QDQLLLDPFNELLNVASEDSTQVISE 449
K+ +F ++S + +++E +T+ L ++Q L++ E L + + +
Sbjct: 34 KQQRQFQLDSLEAAPQKQTQKVENEKTEGTNLKRENQRLME-ICESLEKTKQKISHELQV 92
Query: 450 KSKQINDLQRQLHLTKKQINELTIKHEQCQNE 545
K Q+N + QL+ KKQI +L + ++C++E
Sbjct: 93 KESQVNFQEGQLNSGKKQIEKLEQELKRCKSE 124
Score = 29.6 bits (65), Expect = 7.1
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Frame = +3
Query: 276 KKNIEFIMESYKLTISGLQEEIEKLRTKNRILQDQLL----LDPFNELLNVASEDSTQVI 443
KK+ ++++ K +Q EKL +K L Q L L E LN + + +TQ++
Sbjct: 2804 KKHQALLLDTNKQYEVEIQTYREKLTSKEECLSSQKLEIDLLKSSKEELNNSLKATTQIL 2863
Query: 444 SEKSKQINDLQRQLHLTKKQINELTIKHEQCQNE-RLLSNSHVSLSE 581
E K D K +N+L ++E+ Q + +LL S L E
Sbjct: 2864 EELKKTKMD-------NLKYVNQLKKENERAQGKMKLLIKSCKQLEE 2903
>sp|Q5W0B1|CM007_HUMAN Protein C13orf7
Length = 726
Score = 37.0 bits (84), Expect = 0.044
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +3
Query: 276 KKNIEFIMESYKLTISGLQEEIEKLRTKNRILQDQL--LLDPFNELLNVASEDSTQVISE 449
K +E + + Y+ I LQ+E+E+L++KN L+ Q+ +LDP + +ED V
Sbjct: 89 KTRLELLHKEYEDEIDCLQKEVEELKSKNLSLESQIKTILDPLTLVQGNQNEDKHLVTDN 148
Query: 450 KSK 458
SK
Sbjct: 149 PSK 151
>sp|Q5RD97|CM007_PONPY Protein C13orf7 homolog
Length = 726
Score = 37.0 bits (84), Expect = 0.044
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +3
Query: 276 KKNIEFIMESYKLTISGLQEEIEKLRTKNRILQDQL--LLDPFNELLNVASEDSTQVISE 449
K +E + + Y+ I LQ+E+E+L++KN L+ Q+ +LDP + +ED V
Sbjct: 89 KTRLELLHKEYEDEIDCLQKEVEELKSKNLSLESQIKTILDPLTLVQGNQNEDKHLVTDN 148
Query: 450 KSK 458
SK
Sbjct: 149 PSK 151
>sp|Q02455|MLP1_YEAST Protein MLP1 (Myosin-like protein 1)
Length = 1875
Score = 36.6 bits (83), Expect = 0.058
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 22/118 (18%)
Frame = +3
Query: 264 SENCKKNIEFIMESYKLTISGLQEEIEKLR---TKNRILQDQLLLDPFNE---LLNVA-- 419
S + +E SY+ TI+GL EEI L+ K R +Q QL NE L N+
Sbjct: 1404 SRELQAKLEESTTSYESTINGLNEEITTLKEEIEKQRQIQQQLQATSANEQNDLSNIVES 1463
Query: 420 -----SEDSTQVISEKSKQIND--LQRQLHLTK-KQINELTIK------HEQCQNERL 551
ED + I EK++++N+ L+ Q L + IN IK HEQ ++++
Sbjct: 1464 MKKSFEEDKIKFIKEKTQEVNEKILEAQERLNQPSNINMEEIKKKWESEHEQEVSQKI 1521
Score = 32.7 bits (73), Expect = 0.84
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Frame = +3
Query: 231 SNDNNDFFIFGSENCKKNIEFIMESYKLTISGLQEEIEKLRTKNRILQ-----DQLLLDP 395
+N N +++ E KK+ E ++ S + Q +IEKL+ K + L+ D++ L
Sbjct: 837 NNSNIEWYQNKIEALKKDYESVITS----VDSKQTDIEKLQYKVKSLEKEIEEDKIRLHT 892
Query: 396 FNELLNVASEDSTQVISEKSK-QINDLQRQLHLTKKQINELTIKHEQCQNERL 551
+N + ++DS + EKSK + D Q+ K + E T + Q N +L
Sbjct: 893 YNVMDETINDDSLRKELEKSKINLTDAYSQIK-EYKDLYETTSQSLQQTNSKL 944
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,363,116
Number of Sequences: 369166
Number of extensions: 944868
Number of successful extensions: 2927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2913
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)