Planarian EST Database


Dr_sW_019_P14-1

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_019_P14-1
         (650 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03410|SYCP1_RAT  Synaptonemal complex protein 1 (SCP-1 p...    40   0.004
sp|Q62209|SYCP1_MOUSE  Synaptonemal complex protein 1 (SCP-1...    39   0.015
sp|P25386|USO1_YEAST  Intracellular protein transport protei...    39   0.015
sp|P22311|PU91_SCICO  Puff II/9-1 protein precursor                38   0.020
sp|Q9JMH9|MY18A_MOUSE  Myosin-18A (Myosin XVIIIa) (Myosin co...    37   0.034
sp|Q92614|MY18A_HUMAN  Myosin-18A (Myosin XVIIIa) (Myosin co...    37   0.044
sp|P49454|CENPF_HUMAN  CENP-F kinetochore protein (Centromer...    37   0.044
sp|Q5W0B1|CM007_HUMAN  Protein C13orf7                             37   0.044
sp|Q5RD97|CM007_PONPY  Protein C13orf7 homolog                     37   0.044
sp|Q02455|MLP1_YEAST  Protein MLP1 (Myosin-like protein 1)         37   0.058
>sp|Q03410|SYCP1_RAT Synaptonemal complex protein 1 (SCP-1 protein)
          Length = 997

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 17/148 (11%)
 Frame = +3

Query: 189 TMAVLQKL--TDKLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTISGLQEEIEKLRTKN 362
           T   L++L  T++ +  N+ +   +   E  KK+ E  +E      +  + E+E+L+T  
Sbjct: 384 TTCTLEELLRTEQQRLENNEDQLKLITMELQKKSSE--LEEMTKFKNNKEVELEELKTI- 440

Query: 363 RILQDQLLLDPFNELLNVASE------DSTQVISEKSKQINDLQRQLHLTK-------KQ 503
            + +DQ LLD   ++  +A E      + T ++  + K+I+DL+ Q+ +TK       KQ
Sbjct: 441 -LAEDQKLLDEKKQVEKLAEELQGKEQELTFLLQTREKEIHDLEVQVTVTKTSEEHYLKQ 499

Query: 504 INEL--TIKHEQCQNERLLSNSHVSLSE 581
           + E+   ++ E+ +N  L +NS + L E
Sbjct: 500 VEEMKTELEKEKLKNIELTANSDMLLLE 527
>sp|Q62209|SYCP1_MOUSE Synaptonemal complex protein 1 (SCP-1 protein)
          Length = 993

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 15/98 (15%)
 Frame = +3

Query: 333 EEIEKLRTKNRILQDQLLLDPFNELLNVASE------DSTQVISEKSKQINDLQRQLHLT 494
           +E+E    KN + +DQ LLD   ++  +A E      + T ++  + K+++DLQ Q+ +T
Sbjct: 426 KEVELEELKNILAEDQKLLDEKKQVEKLAEELQEKEQELTFLLETREKEVHDLQEQVTVT 485

Query: 495 K-------KQINEL--TIKHEQCQNERLLSNSHVSLSE 581
           K       KQ+ E+   ++ E+ +N  L ++  + L E
Sbjct: 486 KTSEQHYLKQVEEMKTELEKEKLKNTELTASCDMLLLE 523
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
          Length = 1790

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
 Frame = +3

Query: 201  LQKLTDKLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTISGLQEEIEKLRTKNRILQDQ 380
            L  L +K+   +   + F     + +KNIE +    K TIS L++  E++ +K+   +D+
Sbjct: 996  LSNLQNKIDSMSQEKENFQIERGSIEKNIEQL----KKTISDLEQTKEEIISKSDSSKDE 1051

Query: 381  L-----LLDPFNELLNVASEDSTQVISEKSKQINDLQRQLHLTKKQINELTIKHEQC--- 536
                  LL    E    A++++   ISE +K   +L+ +L   K   NEL  K E     
Sbjct: 1052 YESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKA 1111

Query: 537  -----QNERLLSNSHVSLSEPST 590
                 +NE  L    + L + +T
Sbjct: 1112 LKEVKENEEHLKEEKIQLEKEAT 1134

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
 Frame = +3

Query: 201  LQKLTDKLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTISGLQEEIEKLRTKNRILQDQ 380
            + +L DKLK S D N           K +E   ES K     ++EE++   T+ +I  ++
Sbjct: 1274 VSELEDKLKASEDKN----------SKYLELQKESEK-----IKEELDAKTTELKIQLEK 1318

Query: 381  LLLDPFNELLNVASEDSTQVISEKSKQINDLQRQL-HLTKKQINELTIKHEQCQNERLLS 557
            +        L+ A E S   +S   K  ++ ++      +K  NE+ IK++  + ER L 
Sbjct: 1319 I------TNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLL 1372

Query: 558  N 560
            N
Sbjct: 1373 N 1373
>sp|P22311|PU91_SCICO Puff II/9-1 protein precursor
          Length = 286

 Score = 38.1 bits (87), Expect = 0.020
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
 Frame = +3

Query: 270 NCK-KNIEFI--MESYKLTISGLQEEIEKLRTKNRILQDQLLLDPFNELLNVASEDSTQV 440
           NCK +N + +  +E    TI+ LQEE+E+ R + R LQ Q  LD  N+ L + + +    
Sbjct: 140 NCKAENAKLLKKIEELNCTITQLQEELEQCRARERDLQCQ--LDECNKKLTICNNE---- 193

Query: 441 ISEKSKQINDLQRQLHLTKKQINELTIKHEQCQN 542
           +    KQ  +L+ ++     +I  L  ++  C+N
Sbjct: 194 LIACRKQQEELRCEIERLNAEIKRLEAQNAACEN 227
>sp|Q9JMH9|MY18A_MOUSE Myosin-18A (Myosin XVIIIa) (Myosin containing PDZ domain) (Molecule
            associated with JAK3 N-terminus) (MAJN)
          Length = 2035

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
 Frame = +3

Query: 219  KLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTI-------SGLQEEIEKLRTKNRILQD 377
            +LK   + ++F    +   +K +E  ME   L I       + L+E++ +L+ +   +Q+
Sbjct: 1683 QLKNQLEESEFTCAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQN 1742

Query: 378  QLLLDP--FNELLNVASEDSTQVISEKSKQINDLQRQLHLTKKQINELTIKHEQCQNE 545
            +L  D    NEL+        Q  S    Q+NDLQ Q+  + K+  EL  K +  Q++
Sbjct: 1743 RLEEDQEDMNELMKKHKAAVAQA-SRDMAQMNDLQAQIEESNKEKQELQEKLQALQSQ 1799
>sp|Q92614|MY18A_HUMAN Myosin-18A (Myosin XVIIIa) (Myosin containing PDZ domain) (Molecule
            associated with JAK3 N-terminus) (MAJN)
          Length = 2054

 Score = 37.0 bits (84), Expect = 0.044
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
 Frame = +3

Query: 219  KLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTI-------SGLQEEIEKLRTKNRILQD 377
            +LK   + ++F    +   +K +E  +E   L I       + L+E++ +L+ +   +Q+
Sbjct: 1687 QLKNQLEESEFTCAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQN 1746

Query: 378  QLLLDP--FNELLNVASEDSTQVISEKSKQINDLQRQLHLTKKQINELTIKHEQCQNE 545
            +L  D    NEL+        Q  S    QINDLQ QL    K+  EL  K +  Q++
Sbjct: 1747 RLEEDQEDMNELMKKHKAAVAQA-SRDLAQINDLQAQLEEANKEKQELQEKLQALQSQ 1803
>sp|P49454|CENPF_HUMAN CENP-F kinetochore protein (Centromere protein F) (Mitosin) (AH
            antigen)
          Length = 3210

 Score = 37.0 bits (84), Expect = 0.044
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
 Frame = +3

Query: 210  LTDKLKYSNDNNDFFIFGSENCKKNIEFIMESYKLTI---SGLQEEIEKLRTKNRILQDQ 380
            + +KLK     ND      EN ++ ++   E+ +L I      + E+E L+T+   +   
Sbjct: 2234 IAEKLKERERENDSLKDKVENLERELQMSEENQELVILDAENSKAEVETLKTQIEEMARS 2293

Query: 381  LLLDPFNEL-LNVASEDSTQVISEKSKQINDLQRQLH-----LTKKQINELTIKHEQCQN 542
            L +   + + L    E+ T+ I EK  Q+++L + L      L +K+  E+ IK E    
Sbjct: 2294 LKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFKSLLEEKEQAEIQIKEESKTA 2353

Query: 543  ERLLSNSHVSLSE 581
              +L N    L+E
Sbjct: 2354 VEMLQNQLKELNE 2366

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
 Frame = +3

Query: 276 KKNIEFIMESYKLTISGLQEEIEKLRTKNRIL--QDQLLLDPFNELLNVASEDSTQVISE 449
           K+  +F ++S +       +++E  +T+   L  ++Q L++   E L    +  +  +  
Sbjct: 34  KQQRQFQLDSLEAAPQKQTQKVENEKTEGTNLKRENQRLME-ICESLEKTKQKISHELQV 92

Query: 450 KSKQINDLQRQLHLTKKQINELTIKHEQCQNE 545
           K  Q+N  + QL+  KKQI +L  + ++C++E
Sbjct: 93  KESQVNFQEGQLNSGKKQIEKLEQELKRCKSE 124

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = +3

Query: 276  KKNIEFIMESYKLTISGLQEEIEKLRTKNRILQDQLL----LDPFNELLNVASEDSTQVI 443
            KK+   ++++ K     +Q   EKL +K   L  Q L    L    E LN + + +TQ++
Sbjct: 2804 KKHQALLLDTNKQYEVEIQTYREKLTSKEECLSSQKLEIDLLKSSKEELNNSLKATTQIL 2863

Query: 444  SEKSKQINDLQRQLHLTKKQINELTIKHEQCQNE-RLLSNSHVSLSE 581
             E  K   D         K +N+L  ++E+ Q + +LL  S   L E
Sbjct: 2864 EELKKTKMD-------NLKYVNQLKKENERAQGKMKLLIKSCKQLEE 2903
>sp|Q5W0B1|CM007_HUMAN Protein C13orf7
          Length = 726

 Score = 37.0 bits (84), Expect = 0.044
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 276 KKNIEFIMESYKLTISGLQEEIEKLRTKNRILQDQL--LLDPFNELLNVASEDSTQVISE 449
           K  +E + + Y+  I  LQ+E+E+L++KN  L+ Q+  +LDP   +    +ED   V   
Sbjct: 89  KTRLELLHKEYEDEIDCLQKEVEELKSKNLSLESQIKTILDPLTLVQGNQNEDKHLVTDN 148

Query: 450 KSK 458
            SK
Sbjct: 149 PSK 151
>sp|Q5RD97|CM007_PONPY Protein C13orf7 homolog
          Length = 726

 Score = 37.0 bits (84), Expect = 0.044
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 276 KKNIEFIMESYKLTISGLQEEIEKLRTKNRILQDQL--LLDPFNELLNVASEDSTQVISE 449
           K  +E + + Y+  I  LQ+E+E+L++KN  L+ Q+  +LDP   +    +ED   V   
Sbjct: 89  KTRLELLHKEYEDEIDCLQKEVEELKSKNLSLESQIKTILDPLTLVQGNQNEDKHLVTDN 148

Query: 450 KSK 458
            SK
Sbjct: 149 PSK 151
>sp|Q02455|MLP1_YEAST Protein MLP1 (Myosin-like protein 1)
          Length = 1875

 Score = 36.6 bits (83), Expect = 0.058
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 22/118 (18%)
 Frame = +3

Query: 264  SENCKKNIEFIMESYKLTISGLQEEIEKLR---TKNRILQDQLLLDPFNE---LLNVA-- 419
            S   +  +E    SY+ TI+GL EEI  L+    K R +Q QL     NE   L N+   
Sbjct: 1404 SRELQAKLEESTTSYESTINGLNEEITTLKEEIEKQRQIQQQLQATSANEQNDLSNIVES 1463

Query: 420  -----SEDSTQVISEKSKQIND--LQRQLHLTK-KQINELTIK------HEQCQNERL 551
                  ED  + I EK++++N+  L+ Q  L +   IN   IK      HEQ  ++++
Sbjct: 1464 MKKSFEEDKIKFIKEKTQEVNEKILEAQERLNQPSNINMEEIKKKWESEHEQEVSQKI 1521

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
 Frame = +3

Query: 231  SNDNNDFFIFGSENCKKNIEFIMESYKLTISGLQEEIEKLRTKNRILQ-----DQLLLDP 395
            +N N +++    E  KK+ E ++ S    +   Q +IEKL+ K + L+     D++ L  
Sbjct: 837  NNSNIEWYQNKIEALKKDYESVITS----VDSKQTDIEKLQYKVKSLEKEIEEDKIRLHT 892

Query: 396  FNELLNVASEDSTQVISEKSK-QINDLQRQLHLTKKQINELTIKHEQCQNERL 551
            +N +    ++DS +   EKSK  + D   Q+    K + E T +  Q  N +L
Sbjct: 893  YNVMDETINDDSLRKELEKSKINLTDAYSQIK-EYKDLYETTSQSLQQTNSKL 944
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,363,116
Number of Sequences: 369166
Number of extensions: 944868
Number of successful extensions: 2927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2913
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)