Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_P05
(693 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q08358|PP220_ASFB7 Polyprotein pp220 (220 kDa polyprotei... 34 0.42
sp|Q9PP92|TRMA_CAMJE tRNA (Uracil-5-)-methyltransferase (tR... 31 2.7
sp|Q9X2I8|SYE2_THEMA Glutamyl-tRNA synthetase 2 (Glutamate-... 31 2.7
sp|O97879|CCR5_TRAPH C-C chemokine receptor type 5 (C-C CKR... 30 6.1
sp|O97881|CCR5_PONPY C-C chemokine receptor type 5 (C-C CKR... 30 6.1
sp|O62743|CCR5_CERTO C-C chemokine receptor type 5 (C-C CKR... 30 6.1
sp|P56439|CCR5_GORGO C-C chemokine receptor type 5 (C-C CKR... 30 6.1
sp|P68270|CCR5_PAPHA C-C chemokine receptor type 5 (C-C CKR... 30 6.1
sp|P61815|CCR5_MACNE C-C chemokine receptor type 5 (C-C CKR... 30 6.1
sp|P51681|CCR5_HUMAN C-C chemokine receptor type 5 (C-C CKR... 30 6.1
>sp|Q08358|PP220_ASFB7 Polyprotein pp220 (220 kDa polyprotein) [Contains: p34; p14; p37;
p150]
Length = 2475
Score = 33.9 bits (76), Expect = 0.42
Identities = 27/104 (25%), Positives = 46/104 (44%)
Frame = +1
Query: 1 KLIYFSLINRAVDEKSPEVLQSVLEFCIKNAGWRYLNNTLFLAFFDSLKRNEMISNYEDV 180
KLI +I DE PEV+ E + LF +F D + M+ E +
Sbjct: 883 KLIPTRMILGGADELEPEVIPEAAELYFRLPRLAEFYQKLF-SFRDENVQISMLPELEGI 941
Query: 181 FDLIPRFKLVMLRVILMKYLCSGDFDRYNELRLKENAKEINVVF 312
F ++R+I M+ + + Y+E +++ KEINV++
Sbjct: 942 FS-------GLIRIIFMRPIELINIGDYSETEIRQLIKEINVIY 978
>sp|Q9PP92|TRMA_CAMJE tRNA (Uracil-5-)-methyltransferase
(tRNA(M-5-U54)-methyltransferase) (RUMT)
Length = 357
Score = 31.2 bits (69), Expect = 2.7
Identities = 30/116 (25%), Positives = 51/116 (43%)
Frame = +1
Query: 109 NNTLFLAFFDSLKRNEMISNYEDVFDLIPRFKLVMLRVILMKYLCSGDFDRYNELRLKEN 288
N+TLF A FD + + I Y D D K+ L++YL + +LKE
Sbjct: 53 NDTLFYAMFDPKSKKKYIIEYLDFAD----EKICAFMPRLLEYL-------RQDNKLKEK 101
Query: 289 AKEINVVFTWKFISKHIHTYMNLENVKQLLEEAHKCFNDLVVYNISSILFFDEVLR 456
+ + T + +S + + N+E++K LE N+S+IL + + R
Sbjct: 102 LFGVEFLTTKQELSITLLYHKNIEDIKSNLE------------NLSNILHINLIAR 145
>sp|Q9X2I8|SYE2_THEMA Glutamyl-tRNA synthetase 2 (Glutamate--tRNA ligase 2) (GluRS 2)
Length = 487
Score = 31.2 bits (69), Expect = 2.7
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Frame = +1
Query: 316 WKFISKHIHTYMNLENVKQLLEEAHKCFNDLVVYNISSILFFDEVLRIVNSESFNELDQT 495
+++ ++ ++ E +++LEEA K F DL NS + E+++T
Sbjct: 388 YEYEKDYVEKFLKREEAERVLEEAKKAFKDL------------------NSWNMEEIEKT 429
Query: 496 IRWLREWNLQLAPADVKSILKII-PEKHREIVESSITKVINAVNEERTQRK 645
+R L E L A K + ++I ++V + + I + +ERT ++
Sbjct: 430 LRDLSEKGL----ASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKR 476
>sp|O97879|CCR5_TRAPH C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
sp|P61757|CCR5_SEMEN C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
Length = 352
Score = 30.0 bits (66), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 351 HICVNMFRYEFPSENYVNFLGIFFQSQL 268
H C+N Y F E + N+L +FFQ +
Sbjct: 289 HCCINPIIYAFVGEKFRNYLLVFFQKHI 316
>sp|O97881|CCR5_PONPY C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
sp|P61756|CCR5_PONPA C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
Length = 352
Score = 30.0 bits (66), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 351 HICVNMFRYEFPSENYVNFLGIFFQSQL 268
H C+N Y F E + N+L +FFQ +
Sbjct: 289 HCCINPIIYAFVGEKFRNYLLVFFQKHI 316
>sp|O62743|CCR5_CERTO C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
Length = 352
Score = 30.0 bits (66), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 351 HICVNMFRYEFPSENYVNFLGIFFQSQL 268
H C+N Y F E + N+L +FFQ +
Sbjct: 289 HCCINPIIYAFVGEKFRNYLLVFFQKHI 316
>sp|P56439|CCR5_GORGO C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
Length = 352
Score = 30.0 bits (66), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 351 HICVNMFRYEFPSENYVNFLGIFFQSQL 268
H C+N Y F E + N+L +FFQ +
Sbjct: 289 HCCINPIIYAFVGEKFRNYLLVFFQKHI 316
>sp|P68270|CCR5_PAPHA C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
sp|P68269|CCR5_PAPAN C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
sp|P61755|CCR5_LOPAT C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
Length = 352
Score = 30.0 bits (66), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 351 HICVNMFRYEFPSENYVNFLGIFFQSQL 268
H C+N Y F E + N+L +FFQ +
Sbjct: 289 HCCINPIIYAFVGEKFRNYLLVFFQKHI 316
>sp|P61815|CCR5_MACNE C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
sp|P61814|CCR5_MACFA C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
sp|P61813|CCR5_MACMU C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
Length = 352
Score = 30.0 bits (66), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 351 HICVNMFRYEFPSENYVNFLGIFFQSQL 268
H C+N Y F E + N+L +FFQ +
Sbjct: 289 HCCINPIIYAFVGEKFRNYLLVFFQKHI 316
>sp|P51681|CCR5_HUMAN C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5) (CCR-5) (CCR5)
(HIV-1 fusion coreceptor) (CHEMR13) (CD195 antigen)
Length = 352
Score = 30.0 bits (66), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 351 HICVNMFRYEFPSENYVNFLGIFFQSQL 268
H C+N Y F E + N+L +FFQ +
Sbjct: 289 HCCINPIIYAFVGEKFRNYLLVFFQKHI 316
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,634,128
Number of Sequences: 369166
Number of extensions: 1343327
Number of successful extensions: 4107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4105
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)