Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_O13
(850 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta... 234 2e-61
sp|P26308|GBB1_DROME Guanine nucleotide-binding protein bet... 232 1e-60
sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein bet... 230 3e-60
sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I... 229 9e-60
sp|Q08706|GBB_LYMST Guanine nucleotide-binding protein beta... 226 8e-59
sp|P79959|GBB1_XENLA Guanine nucleotide-binding protein G(I... 226 8e-59
sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein bet... 224 3e-58
sp|Q6PH57|GBB1_BRARE Guanine nucleotide-binding protein G(I... 224 3e-58
sp|P54311|GBB1_RAT Guanine nucleotide-binding protein G(I)/... 222 1e-57
sp|Q6TMK6|GBB1_CRIGR Guanine nucleotide-binding protein G(I... 222 1e-57
>sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta subunit
Length = 341
Score = 234 bits (598), Expect = 2e-61
Identities = 109/117 (93%), Positives = 114/117 (97%)
Frame = +2
Query: 5 GHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSGR 184
GHESDINAIT+FPNG AFATGSDDATCRLFDIRADQEIGM+SHDNIICGITSVAFSKSGR
Sbjct: 225 GHESDINAITYFPNGFAFATGSDDATCRLFDIRADQEIGMYSHDNIICGITSVAFSKSGR 284
Query: 185 LLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
LLLGGYDDFNCNVWD LKQ+RAGVLAGHDNRVSCLGV+EDGMAV TGSWDSFL+IWN
Sbjct: 285 LLLGGYDDFNCNVWDVLKQERAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 341
>sp|P26308|GBB1_DROME Guanine nucleotide-binding protein beta subunit 1
Length = 340
Score = 232 bits (591), Expect = 1e-60
Identities = 104/118 (88%), Positives = 114/118 (96%)
Frame = +2
Query: 2 PGHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSG 181
PGHESDINA+TFFPNGQAFATGSDDATCRLFDIRADQE+ M+SHDNIICGITSVAFSKSG
Sbjct: 223 PGHESDINAVTFFPNGQAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSG 282
Query: 182 RLLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
RLLL GYDDFNCNVWDT+K +R+G+LAGHDNRVSCLGV+E+GMAV TGSWDSFLR+WN
Sbjct: 283 RLLLAGYDDFNCNVWDTMKAERSGILAGHDNRVSCLGVTENGMAVATGSWDSFLRVWN 340
Score = 30.8 bits (68), Expect = 5.0
Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Frame = +2
Query: 2 PGHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICG--ITSVAFSK 175
P S + + P+G A G D C +++++ + S + G ++ F
Sbjct: 94 PLRSSWVMTCAYAPSGSYVACGGLDNMCSIYNLKTREGNVRVSRELPGHGGYLSCCRFLD 153
Query: 176 SGRLLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
+++ D +C +WD + GH V L ++ +G+ D+ ++W+
Sbjct: 154 DNQIVTSS-GDMSCGLWDIETGLQVTSFLGHTGDVMALSLAPQCKTFVSGACDASAKLWD 212
>sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein beta subunit 1
sp|Q61ZF6|GBB1_CAEBR Guanine nucleotide-binding protein beta subunit 1
Length = 340
Score = 230 bits (587), Expect = 3e-60
Identities = 103/118 (87%), Positives = 113/118 (95%)
Frame = +2
Query: 2 PGHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSG 181
PGHESDINA+ FFP+G AFATGSDDATCRLFDIRADQE+ M+SHDNIICGITSVAFSKSG
Sbjct: 223 PGHESDINAVAFFPSGNAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSG 282
Query: 182 RLLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
RLL GYDDFNCNVWD+++Q+RAGVLAGHDNRVSCLGV+EDGMAVCTGSWDSFL+IWN
Sbjct: 283 RLLFAGYDDFNCNVWDSMRQERAGVLAGHDNRVSCLGVTEDGMAVCTGSWDSFLKIWN 340
Score = 35.0 bits (79), Expect = 0.26
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +2
Query: 2 PGHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNI-ICGITSVAFSKS 178
P S + + P+G A G D C ++ ++ + S + G S
Sbjct: 94 PLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD 153
Query: 179 GRLLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
++ D C +WD + GH V L +S D +G+ D+ ++W+
Sbjct: 154 DNQIVTSSGDMTCALWDIETGQQCTAFTGHTGDVMSLSLSPDFRTFISGACDASAKLWD 212
>sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 229 bits (583), Expect = 9e-60
Identities = 103/118 (87%), Positives = 113/118 (95%)
Frame = +2
Query: 2 PGHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSG 181
PGHESDINA+TFFPNG AFATGSDDATCRLFDIRADQE+ M+SHDNIICGITSVAFSKSG
Sbjct: 223 PGHESDINAVTFFPNGHAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSG 282
Query: 182 RLLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
+LLL GYDDFNCNVWD+++ +RAGVLAGHDNRVSCLGV+EDGMAV TGSWDSFL+IWN
Sbjct: 283 KLLLAGYDDFNCNVWDSMRTERAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 340
Score = 32.3 bits (72), Expect = 1.7
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +2
Query: 2 PGHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNI-ICGITSVAFSKS 178
P S + + P+G A G D C ++ ++ + S + G S
Sbjct: 94 PLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFVD 153
Query: 179 GRLLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
++ D C +WD + GH V L +S + +G+ D+ ++W+
Sbjct: 154 DNQIVTSSGDMTCALWDIETGQQCTQFTGHTGDVMSLSLSPNMRTFTSGACDASAKLWD 212
>sp|Q08706|GBB_LYMST Guanine nucleotide-binding protein beta subunit
Length = 341
Score = 226 bits (575), Expect = 8e-59
Identities = 105/117 (89%), Positives = 110/117 (94%)
Frame = +2
Query: 5 GHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSGR 184
GHESDINAIT+FPNG AFATGSDDATCRLFDIRADQEIGM+SHDNIICGITSVAFSKSGR
Sbjct: 225 GHESDINAITYFPNGHAFATGSDDATCRLFDIRADQEIGMYSHDNIICGITSVAFSKSGR 284
Query: 185 LLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
LLLG YDDFNCNVWD LKQ+ GVLAGHDNRVSCLGV+EDG AV TGSWDSFL+IWN
Sbjct: 285 LLLGRYDDFNCNVWDVLKQETHGVLAGHDNRVSCLGVTEDGSAVATGSWDSFLKIWN 341
Score = 33.9 bits (76), Expect = 0.58
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +2
Query: 2 PGHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNI-ICGITSVAFSKS 178
P S + + P+G A G D C ++ ++ + S + G S
Sbjct: 95 PLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFID 154
Query: 179 GRLLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
++ D +C +WD + GH V L S D +G+ D+ ++W+
Sbjct: 155 DNSIVTSSGDMSCALWDIETGQQTTSFTGHTGDVMSLSTSPDFRTFVSGACDASAKLWD 213
>sp|P79959|GBB1_XENLA Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1) (XGbeta1)
Length = 340
Score = 226 bits (575), Expect = 8e-59
Identities = 104/117 (88%), Positives = 111/117 (94%)
Frame = +2
Query: 5 GHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSGR 184
GHESDINAI FFPNG AFATGSDDATCRLFD+RADQE+ ++SHDNIICGITSVAFSKSGR
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMVYSHDNIICGITSVAFSKSGR 283
Query: 185 LLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
LLL GYDDFNCNVWDTLK DRAGVLAGHDNRVSCLGV++DGMAV TGSWDSFL+IWN
Sbjct: 284 LLLAGYDDFNCNVWDTLKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.20
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Frame = +2
Query: 2 PGHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNI-ICGITSVAFSKS 178
P S + + P+G A G D C +++++ + S + G S
Sbjct: 94 PLRSSWVMTCAYAPSGNYVACGGLDNICPIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 179 GRLLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
++ D C +WD + GH V L ++ D +G+ D+ ++W+
Sbjct: 154 DNQIITSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDSRCFVSGACDASAKLWD 212
>sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein beta subunit 4 (Transducin beta
chain 4)
Length = 340
Score = 224 bits (570), Expect = 3e-58
Identities = 103/117 (88%), Positives = 111/117 (94%)
Frame = +2
Query: 5 GHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSGR 184
GH SDINA++FFPNG AFATGSDDATCRLFD+RADQE+ ++SHDNIICGITSVAFSKSGR
Sbjct: 224 GHVSDINAVSFFPNGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGR 283
Query: 185 LLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
LLL GYDDFNCNVWDTLK DRAGVLAGHDNRVSCLGV++DGMAV TGSWDSFLRIWN
Sbjct: 284 LLLAGYDDFNCNVWDTLKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340
Score = 34.7 bits (78), Expect = 0.34
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Frame = +2
Query: 2 PGHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNI-ICGITSVAFSKS 178
P S + + P+G A G D C +++++ + S + G S
Sbjct: 94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSCCRFLD 153
Query: 179 GRLLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
++ D C +WD + GH V L +S D +G+ D+ ++W+
Sbjct: 154 DSQIVTSSGDTTCALWDIETAQQTTTFTGHSGDVMSLSLSPDMRTFVSGACDASSKLWD 212
>sp|Q6PH57|GBB1_BRARE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 224 bits (570), Expect = 3e-58
Identities = 103/117 (88%), Positives = 110/117 (94%)
Frame = +2
Query: 5 GHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSGR 184
GHESDINAI FFPNG AFATGSDDATCRLFD+RADQE+ ++SHDNIICGITSVAFSKSGR
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMVYSHDNIICGITSVAFSKSGR 283
Query: 185 LLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
LLL GYDDFNCNVWD LK DRAGVLAGHDNRVSCLGV++DGMAV TGSWDSFL+IWN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 48.9 bits (115), Expect = 2e-05
Identities = 30/117 (25%), Positives = 54/117 (46%)
Frame = +2
Query: 5 GHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSGR 184
GH ++ F + Q T S D TC L+DI Q+ F+ + S++ + R
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFAGHT--GDVMSLSLAPDTR 197
Query: 185 LLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
L + G D + +WD + GH++ ++ + +G A TGS D+ R+++
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
>sp|P54311|GBB1_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62874|GBB1_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62873|GBB1_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62872|GBB1_CANFA Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62871|GBB1_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 222 bits (565), Expect = 1e-57
Identities = 102/117 (87%), Positives = 109/117 (93%)
Frame = +2
Query: 5 GHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSGR 184
GHESDINAI FFPNG AFATGSDDATCRLFD+RADQE+ +SHDNIICGITSV+FSKSGR
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 185 LLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
LLL GYDDFNCNVWD LK DRAGVLAGHDNRVSCLGV++DGMAV TGSWDSFL+IWN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 48.9 bits (115), Expect = 2e-05
Identities = 30/117 (25%), Positives = 54/117 (46%)
Frame = +2
Query: 5 GHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSGR 184
GH ++ F + Q T S D TC L+DI Q+ F+ + S++ + R
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTR 197
Query: 185 LLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
L + G D + +WD + GH++ ++ + +G A TGS D+ R+++
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
>sp|Q6TMK6|GBB1_CRIGR Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 222 bits (565), Expect = 1e-57
Identities = 102/117 (87%), Positives = 109/117 (93%)
Frame = +2
Query: 5 GHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSGR 184
GHESDINAI FFPNG AFATGSDDATCRLFD+RADQE+ +SHDNIICGITSV+FSKSGR
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 185 LLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
LLL GYDDFNCNVWD LK DRAGVLAGHDNRVSCLGV++DGMAV TGSWDSFL+IWN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 49.7 bits (117), Expect = 1e-05
Identities = 30/117 (25%), Positives = 55/117 (47%)
Frame = +2
Query: 5 GHESDINAITFFPNGQAFATGSDDATCRLFDIRADQEIGMFSHDNIICGITSVAFSKSGR 184
GH ++ F + Q T S+D TC L+DI Q+ F+ + S++ + R
Sbjct: 141 GHTGYLSCCRFLNDNQ-IVTSSEDTTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTR 197
Query: 185 LLLGGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAVCTGSWDSFLRIWN 355
L + G D + +WD + GH++ ++ + +G A TGS D+ R+++
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,144,063
Number of Sequences: 369166
Number of extensions: 1304921
Number of successful extensions: 4920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4269
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)