Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_N24
(883 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19859|IVBCI_NAJNA Venom chymotrypsin inhibitor 32 2.3
sp|P31650|S6A11_MOUSE Sodium- and chloride-dependent GABA t... 30 6.8
sp|P48066|S6A11_HUMAN Sodium- and chloride-dependent GABA t... 30 6.8
sp|P31647|S6A11_RAT Sodium- and chloride-dependent GABA tra... 30 6.8
sp|P66038|RISB_SALTY 6,7-dimethyl-8-ribityllumazine synthas... 30 8.9
>sp|P19859|IVBCI_NAJNA Venom chymotrypsin inhibitor
Length = 57
Score = 32.0 bits (71), Expect = 2.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 601 YNSYDNNCHNFYNNGCHNNCLRSAWCNRC 687
YN Y N CH+F +GC N R + C
Sbjct: 23 YNRYSNTCHSFTYSGCGKNANRFRTIDEC 51
>sp|P31650|S6A11_MOUSE Sodium- and chloride-dependent GABA transporter 4 (GAT4)
Length = 627
Score = 30.4 bits (67), Expect = 6.8
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 589 CHTNYNSYDNNCHNFYNNGCHNNCLRSAWCNRCTSSVR*IFE*SENGMLIY*QKIP 756
C T SY+N YNN C+ +C+ N TS V S G + Y Q +P
Sbjct: 311 CLTALGSYNN-----YNNNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVP 361
>sp|P48066|S6A11_HUMAN Sodium- and chloride-dependent GABA transporter 3
Length = 632
Score = 30.4 bits (67), Expect = 6.8
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 589 CHTNYNSYDNNCHNFYNNGCHNNCLRSAWCNRCTSSVR*IFE*SENGMLIY*QKIP 756
C T SY+N YNN C+ +C+ N TS V S G + Y Q +P
Sbjct: 316 CLTALGSYNN-----YNNNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVP 366
>sp|P31647|S6A11_RAT Sodium- and chloride-dependent GABA transporter 3
Length = 627
Score = 30.4 bits (67), Expect = 6.8
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 589 CHTNYNSYDNNCHNFYNNGCHNNCLRSAWCNRCTSSVR*IFE*SENGMLIY*QKIP 756
C T SY+N YNN C+ +C+ N TS V S G + Y Q +P
Sbjct: 311 CLTALGSYNN-----YNNNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVP 361
>sp|P66038|RISB_SALTY 6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (Lumazine
synthase) (Riboflavin synthase beta chain)
sp|P66039|RISB_SALTI 6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (Lumazine
synthase) (Riboflavin synthase beta chain)
Length = 156
Score = 30.0 bits (66), Expect = 8.9
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 659 AYDLPGATDAPARSGEYSSKVRMG 730
AY+LP AT+A A+SG+Y + V +G
Sbjct: 57 AYELPLATEALAKSGKYDAVVALG 80
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,143,734
Number of Sequences: 369166
Number of extensions: 1400419
Number of successful extensions: 4542
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4433
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)